Literature DB >> 33216724

Deep Learning Methods for Lung Cancer Segmentation in Whole-Slide Histopathology Images-The ACDC@LungHP Challenge 2019.

Zhang Li, Jiehua Zhang, Tao Tan, Xichao Teng, Xiaoliang Sun, Hong Zhao, Lihong Liu, Yang Xiao, Byungjae Lee, Yilong Li, Qianni Zhang, Shujiao Sun, Yushan Zheng, Junyu Yan, Ni Li, Yiyu Hong, Junsu Ko, Hyun Jung, Yanling Liu, Yu-Cheng Chen, Ching-Wei Wang, Vladimir Yurovskiy, Pavel Maevskikh, Vahid Khanagha, Yi Jiang, Li Yu, Zhihong Liu, Daiqiang Li, Peter J Schuffler, Qifeng Yu, Hui Chen, Yuling Tang, Geert Litjens.   

Abstract

Accurate segmentation of lung cancer in pathology slides is a critical step in improving patient care. We proposed the ACDC@LungHP (Automatic Cancer Detection and Classification in Whole-slide Lung Histopathology) challenge for evaluating different computer-aided diagnosis (CADs) methods on the automatic diagnosis of lung cancer. The ACDC@LungHP 2019 focused on segmentation (pixel-wise detection) of cancer tissue in whole slide imaging (WSI), using an annotated dataset of 150 training images and 50 test images from 200 patients. This paper reviews this challenge and summarizes the top 10 submitted methods for lung cancer segmentation. All methods were evaluated using metrics using the precision, accuracy, sensitivity, specificity, and DICE coefficient (DC). The DC ranged from 0.7354 ±0.1149 to 0.8372 ±0.0858. The DC of the best method was close to the inter-observer agreement (0.8398 ±0.0890). All methods were based on deep learning and categorized into two groups: multi-model method and single model method. In general, multi-model methods were significantly better (p 0.01) than single model methods, with mean DC of 0.7966 and 0.7544, respectively. Deep learning based methods could potentially help pathologists find suspicious regions for further analysis of lung cancer in WSI.

Entities:  

Year:  2021        PMID: 33216724     DOI: 10.1109/JBHI.2020.3039741

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   5.772


  8 in total

Review 1.  Machine Learning and Deep Learning Techniques for Optic Disc and Cup Segmentation - A Review.

Authors:  Mohammed Alawad; Abdulrhman Aljouie; Suhailah Alamri; Mansour Alghamdi; Balsam Alabdulkader; Norah Alkanhal; Ahmed Almazroa
Journal:  Clin Ophthalmol       Date:  2022-03-11

2.  Histopathological Tissue Segmentation of Lung Cancer with Bilinear CNN and Soft Attention.

Authors:  Rui Xu; Zhizhen Wang; Zhenbing Liu; Chu Han; Lixu Yan; Huan Lin; Zeyan Xu; Zhengyun Feng; Changhong Liang; Xin Chen; Xipeng Pan; Zaiyi Liu
Journal:  Biomed Res Int       Date:  2022-07-07       Impact factor: 3.246

3.  Lung Cancer Detection Based on Kernel PCA-Convolution Neural Network Feature Extraction and Classification by Fast Deep Belief Neural Network in Disease Management Using Multimedia Data Sources.

Authors:  Deepak Kumar Jain; Kesana Mohana Lakshmi; Kothapalli Phani Varma; Manikandan Ramachandran; Subrato Bharati
Journal:  Comput Intell Neurosci       Date:  2022-05-27

4.  Fast Segmentation of Metastatic Foci in H&E Whole-Slide Images for Breast Cancer Diagnosis.

Authors:  Muhammad-Adil Khalil; Yu-Ching Lee; Huang-Chun Lien; Yung-Ming Jeng; Ching-Wei Wang
Journal:  Diagnostics (Basel)       Date:  2022-04-14

5.  Overcoming an Annotation Hurdle: Digitizing Pen Annotations from Whole Slide Images.

Authors:  Peter J Schüffler; Dig Vijay Kumar Yarlagadda; Chad Vanderbilt; Thomas J Fuchs
Journal:  J Pathol Inform       Date:  2021-02-23

Review 6.  Deep Learning With Radiomics for Disease Diagnosis and Treatment: Challenges and Potential.

Authors:  Xingping Zhang; Yanchun Zhang; Guijuan Zhang; Xingting Qiu; Wenjun Tan; Xiaoxia Yin; Liefa Liao
Journal:  Front Oncol       Date:  2022-02-17       Impact factor: 6.244

7.  Artificial Intelligence-based Tumor Segmentation in Mouse Models of Lung Adenocarcinoma.

Authors:  Alena Arlova; Chengcheng Jin; Abigail Wong-Rolle; Eric S Chen; Curtis Lisle; G Thomas Brown; Nathan Lay; Peter L Choyke; Baris Turkbey; Stephanie Harmon; Chen Zhao
Journal:  J Pathol Inform       Date:  2022-01-20

8.  A Weakly Supervised Deep Learning Method for Guiding Ovarian Cancer Treatment and Identifying an Effective Biomarker.

Authors:  Ching-Wei Wang; Yu-Ching Lee; Cheng-Chang Chang; Yi-Jia Lin; Yi-An Liou; Po-Chao Hsu; Chun-Chieh Chang; Aung-Kyaw-Oo Sai; Chih-Hung Wang; Tai-Kuang Chao
Journal:  Cancers (Basel)       Date:  2022-03-24       Impact factor: 6.639

  8 in total

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