Literature DB >> 33215051

Clinical Relevance of RNA Editing to Early Detection of Cancer in Human.

Mujib Ullah1, Asma Akbar1.   

Abstract

DNA encodes RNA and is responsible for protein production in cells. RNA editing is the process by which genetic information is altered in the RNA molecule. RNA editing in cancer initiation, progression and development has been well documented and play an important role in tumorigenesis. Studying RNA editing and its application to change genetic information after transcription, RNA-editing technology could be an important innovation in cancer and has the potential for more effective precision treatment. Bioengineering integration approach and artificial intelligence could revolutionize the entire field of RNA editing for early detection of cancer.

Entities:  

Year:  2020        PMID: 33215051      PMCID: PMC7671586          DOI: 10.23937/2469-570x/1410066

Source DB:  PubMed          Journal:  Int J Stem Cell Res Ther        ISSN: 2469-570X


RNA, a short-intermediate of DNA, is responsible for protein production in cells [1,2]. RNA editing is a better tool to understand how genetic information flows from DNA to protein [2,3]. In the last decade, efficient and precise RNA editing to correct disease-relevant transcripts have started to attract considerable attention for treating genetic diseases and cancer [2,4]. RNA editing involves the insertion, deletion or substitution of nucleotides within parent RNA, and alters RNA sequence without altering the sequence of genomic DNA [2,5]. Unlike DNA editing, which is permanent, the effects of RNA editing are reversible and transient [4,5]. Therefore, they would offer a new strategy for treating temporary conditions like pain or inflammation [4,5]. Many scientists are developing RNA-editing therapies, and some are trying to design new RNA editors [4]. Researchers are also designing molecules that guide our own enzymes to precisely edit RNA [4,6]. Multiple studies have recently linked RNA editing to cancer development and in metastasis of breast and many other types of cancer. Cancer is the leading cause of deaths worldwide [1,7]. One solution is to diagnose cancer at an early stage. The rapidly evolving technologies are doing much in this area but need to be expanded. Today, we propose novel RNA editing is a post-transcriptional process that alters the nucleotide sequences of certain transcripts, and can be used for diagnostic and treatment of cancer. RNA editing converting adenosines to inosines [4]. Even though RNA editing is associated with cancer development, the function and clinical relevance of editing in cancers have not been well studied [4,8]. Publicly available, DARNED and RADAR are the two main databases of RNA editing [4,9,10]. These databases can be used for bioinformatics hunting to search and identify RNA editing sites in a specific genomic location [5,9,10]. RNA editing will enable to identify early stage tumor which make it potentially been related with the process of early diagnosis in cancer [5,8]. Therefore, RNA editing enzymes such as ADARs and APOBECs are promising potential biomarkers in cancer and metastatic diseases [2,3,8,11]. RNA editing, can be used to fix the genetic mutation in cancer [3,8,11]. None of the RNA editors are perfect yet [5]. Understanding the precise role of RNA editing remains a challenge and needs further study to explore its role in cancer research. RNA editing could be used to unravel dormant cancer stem cells that often escape chemotherapies [2,3,5]. In this way the RNA editing could be used that target therapeutic resistance and tumor relapse, and also highlights ADAR and CD9 as specific targets for cancer stem cell elimination [2,8,12,13]. We propose that engineered-guided-RNAs that bind ADAR and direct it to fix RNA mutations would bring new opportunities to identify cancer biomarkers at early stage [2,5,6]. Using RNA editing sites as a tool, many early events in the cancer progression can be identified.
  13 in total

Review 1.  Critical review on engineering deaminases for site-directed RNA editing.

Authors:  Paul Vogel; Thorsten Stafforst
Journal:  Curr Opin Biotechnol       Date:  2018-09-05       Impact factor: 9.740

Review 2.  Detection and Application of RNA Editing in Cancer.

Authors:  Mengjia Qian; Claudio Spada; Xiangdong Wang
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

Review 3.  Emerging role of stem cell-derived extracellular microRNAs in age-associated human diseases and in different therapies of longevity.

Authors:  Mujib Ullah; Nathan Norton Ng; Waldo Concepcion; Avnesh S Thakor
Journal:  Ageing Res Rev       Date:  2019-11-05       Impact factor: 10.895

Review 4.  RNA Editing by ADAR Adenosine Deaminases: From Molecular Plasticity of Neural Proteins to the Mechanisms of Human Cancer.

Authors:  A O Goncharov; A A Kliuchnikova; S S Nasaev; S A Moshkovskii
Journal:  Biochemistry (Mosc)       Date:  2019-08       Impact factor: 2.487

Review 5.  The Role of RNA Editing in Cancer Development and Metabolic Disorders.

Authors:  Che-Pei Kung; Leonard B Maggi; Jason D Weber
Journal:  Front Endocrinol (Lausanne)       Date:  2018-12-18       Impact factor: 5.555

6.  Mesenchymal stem cells confer chemoresistance in breast cancer via a CD9 dependent mechanism.

Authors:  Mujib Ullah; Asma Akbar; Nathan Norton Ng; Waldo Concepcion; Avnesh S Thakor
Journal:  Oncotarget       Date:  2019-05-28

7.  An emerging role of CD9 in stemness and chemoresistance.

Authors:  Mujib Ullah; Asma Akbar; Avnesh S Thakor
Journal:  Oncotarget       Date:  2019-06-18

Review 8.  Stem cell-derived extracellular vesicles: role in oncogenic processes, bioengineering potential, and technical challenges.

Authors:  Mujib Ullah; Yang Qiao; Waldo Concepcion; Avnesh S Thakor
Journal:  Stem Cell Res Ther       Date:  2019-11-26       Impact factor: 6.832

9.  RADAR: a rigorously annotated database of A-to-I RNA editing.

Authors:  Gokul Ramaswami; Jin Billy Li
Journal:  Nucleic Acids Res       Date:  2013-10-25       Impact factor: 16.971

10.  APOBEC3-Mediated RNA Editing in Breast Cancer is Associated with Heightened Immune Activity and Improved Survival.

Authors:  Mariko Asaoka; Takashi Ishikawa; Kazuaki Takabe; Santosh K Patnaik
Journal:  Int J Mol Sci       Date:  2019-11-10       Impact factor: 5.923

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  7 in total

Review 1.  Different Sourced Extracellular Vesicles and Their Potential Applications in Clinical Treatments.

Authors:  Leila Bahmani; Mujib Ullah
Journal:  Cells       Date:  2022-06-21       Impact factor: 7.666

2.  Advances in innovative exosome-technology for real time monitoring of viable drugs in clinical translation, prognosis and treatment response.

Authors:  Mujib Ullah; Nicole Pek Min Qian; Gustavo Yannarelli
Journal:  Oncotarget       Date:  2021-05-25

3.  Artificial intelligence and guidance of medicine in the bubble.

Authors:  Asma Akbar; Nagavalli Pillalamarri; Sriya Jonnakuti; Mujib Ullah
Journal:  Cell Biosci       Date:  2021-06-09       Impact factor: 7.133

Review 4.  Diagnostic and Therapeutic Potential of Extracellular Vesicles.

Authors:  Sai Priyanka Kodam; Mujib Ullah
Journal:  Technol Cancer Res Treat       Date:  2021 Jan-Dec

Review 5.  Cytidine deamination-induced perpetual immunity to SAR-CoV-2 infection is a potential new therapeutic target.

Authors:  Asad Ullah; Neelam Mabood; Muhammad Maqbool; Luqman Khan; Mujib Ullah
Journal:  Int J Med Sci       Date:  2021-10-15       Impact factor: 3.738

6.  Heat shock protein 20 promotes sirtuin 1-dependent cell proliferation in induced pluripotent stem cells.

Authors:  Mujib Ullah; Nicole Pek Min Qian; Gustavo Yannarelli; Asma Akbar
Journal:  World J Stem Cells       Date:  2021-06-26       Impact factor: 5.326

Review 7.  Methodologies to Isolate and Purify Clinical Grade Extracellular Vesicles for Medical Applications.

Authors:  Asma Akbar; Farzaneh Malekian; Neda Baghban; Sai Priyanka Kodam; Mujib Ullah
Journal:  Cells       Date:  2022-01-06       Impact factor: 6.600

  7 in total

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