| Literature DB >> 33214226 |
Lei Shi1, Caihua Xu2, Yutong Ma3, Qiuxiang Ou3, Xue Wu3, Songhua Lu4, Yang Shao5,6, Renhua Guo7, Jinliang Kong8.
Abstract
BACKGROUND: ERBB2 exon 16 skipping is an alternatively spliced isoform of ERBB2, which was reported to lead to oncogenic activation of ERBB2 and could potentially cause tyrosine kinase inhibitor (TKI) resistance in non-small cell lung cancer (NSCLC) in case studies. In this study, we aimed to evaluate the frequency of ERBB2 exon 16 skipping in a large patient cohort and its function in cancer development.Entities:
Keywords: ERBB2; TKI resistance; exon skipping; lung cancer; oncogenesis
Year: 2020 PMID: 33214226 PMCID: PMC7678393 DOI: 10.1136/esmoopen-2020-000985
Source DB: PubMed Journal: ESMO Open ISSN: 2059-7029
Patient characteristics and mutational information
| Clinical information | Total (N=18) | Lung (N=12) | Non-lung (N=6) |
| Median age (range) | 53 (28–80) | 52 (28–70) | 62 (49–80) |
| Sex | |||
| Male | 7 (38.9%) | 4 (33.3%) | 3 (50%) |
| Female | 11 (61.1%) | 8 (66.7%) | 3 (50%) |
| Stage | |||
| IV | 9 (50%) | 7 (58.3%) | 2 (33.3%) |
| Unknown | 9 (50%) | 5 (41.7%) | 4 (66.7%) |
| Treatment | |||
| TKI-involved | 10 (55.6%) | 9 (75%) | 1 (16.7%) |
| TKI-exclusive | 4 (22.2%) | 2 (16.7%) | 2 (33.3%) |
| Unknown | 4 (22.2%) | 1 (8.3%) | 3 (50%) |
| Mutation type | |||
| Ex16 deletion | 13 (72.2%)* | 8 (66.7%)* | 5 (83.3%) |
| Splice site deletion | 2 (11.1%) | 1 (8.3%) | 1 (16.7%) |
| Splice site point mutation | 4 (22.2%)* | 4 (33.3%)* | 0 |
*One patient harboured both Ex16 deletion and splice site point mutation.
Ex16, exon 16; TKI, tyrosine kinase inhibitor.
Figure 1OncoPrint showing the distribution of genomic alterations in patients with lung cancer. OncoPrint provides an overview of genomic alterations (legend) in particular genes (rows) affecting individual samples (columns). The missense, frameshift, non-sense, inframe deletion and copy number gain are shown as green, blue, orange, purple and red, respectively. The mutational frequency of each gene is labelled on the left. The relative TMB of each patient is shown on top of the patient ID. The bottom annotation indicates the mutation type (solid bar: exon 16 deletion; open bar: splice site variant) causing the ERBB2 exon 16 skipping, NGS sample type (yellow: FFPE; blue: tissue; red: plasma) and TKI treatments (white: no TKI treatments; purple: post-TKIs). NGS, next-generation sequencing; TKI, tyrosine kinase inhibitor; TMB, tumor mutational burden; FFPE, formalin-fixed paraffin-embedded.
Figure 2Schematic diagram of ERBB2 exon 16 skipping and RNA-seq validation. (A) The positions of all ERBB2 exon 16 skipping variations identified in 18 patients are displayed in relation to the ERBB2 gene. Point mutations are highlighted in red. Deleted regions are shown by the light blue boxes with inserted nucleotides labelled in white if applicable. (B) SASHIMI plots for reads alignment at ERBB2 locus of patient 4 with NSCLC; patient 6 with rectal cancer; and patient 9 with ovarian cancer. The number of reads corresponding to specific exon–exon junctions (shown as loops) is labelled for each junction. The coverage of RNA-seq for each sample is indicated on the y-axis. Genomic coordinates of chromosome 17 show the location of ERBB2 exon 15–17. Schematic illustrations of wild-type ERBB2 and exon-16-skipping ERBB2 are shown corresponding to the genomic coordinates. NSCLC, non-small cell lung cancer.
Figure 3Clinical history and sample collection time points of three NSCLC patients Clinical treatments and primary diagnoses of each patient are located on top of the black time arrow which are coloured by treatment type (blue: TKI treatments; green: chemotherapy; pink: trastuzumb; and red: surgery). Disease progressions are indicated by the yellow circle with ‘PD’. The time points of plasma, FFPE or tissue samples collected from each patient are shown along the time arrow. For each detected sample, EGFR-related and ERBB2-related mutations are listed in the box with mutational allele frequencies. ERBB2 exon 16 skipping, both large fragment deletion (ERBB2ΔEx16) and splice site mutations are highlighted in red. EGFR, epidermal growth factor receptor; NSCLC, non-small cell lung cancer; TKI, tyrosine kinase inhibitor; FFPE, formalin-fixed paraffin-embedded; PD, progressed disease.