Literature DB >> 33213279

Adapting a Low-Cost and Open-Source Commercial Pipetting Robot for Nanoliter Liquid Handling.

E Enoch A W Councill1, Nathanial B Axtell1, Thy Truong1, Yiran Liang1, Adam L Aposhian1, Kei G I Webber1, Ying Zhu2, Yongzheng Cong1, Richard H Carson1, Ryan T Kelly1,2.   

Abstract

Low-volume liquid handling capabilities in bioanalytical workflows can dramatically improve sample processing efficiency and reduce reagent costs, yet many commercial nanoliter liquid handlers cost tens of thousands of dollars or more. We have successfully adapted a low-cost and open-source commercial pipetting robot, the Opentrons OT-1, to accurately aspirate and dispense nanoliter volumes. Based on fluorescence measurements, the modified OT-1 was able to reproducibly transfer 50 nL of water with less than 3% measurement error and 5% coefficient of variation (CV). For 15 nL transfers, the volume measurements indicated less than 4% error and 4% CV. We applied this platform to the preparation of low-nanogram proteomic samples for liquid chromatography-mass spectrometry analysis, demonstrating that the modified OT-1 is an effective platform for nanoliter liquid handling. At a total materials cost of less than $6000, including the commercial liquid handler and all modifications, this system is also far less expensive than other platforms with similar capabilities, placing automated nanoliter handling within reach of a far broader scientific community.

Entities:  

Keywords:  Opentrons; automation; liquid handling; mass spectrometry; nanoPOTS; sample preparation

Mesh:

Year:  2020        PMID: 33213279      PMCID: PMC8143861          DOI: 10.1177/2472630320973591

Source DB:  PubMed          Journal:  SLAS Technol        ISSN: 2472-6303            Impact factor:   2.813


  22 in total

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4.  Proteome Profiling of 1 to 5 Spiked Circulating Tumor Cells Isolated from Whole Blood Using Immunodensity Enrichment, Laser Capture Microdissection, Nanodroplet Sample Processing, and Ultrasensitive nanoLC-MS.

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Journal:  Anal Chem       Date:  2018-10-05       Impact factor: 6.986

5.  Mass Activated Droplet Sorting (MADS) Enables High-Throughput Screening of Enzymatic Reactions at Nanoliter Scale.

Authors:  Daniel A Holland-Moritz; Michael K Wismer; Benjamin F Mann; Iman Farasat; Paul Devine; Erik D Guetschow; Ian Mangion; Christopher J Welch; Jeffrey C Moore; Shuwen Sun; Robert T Kennedy
Journal:  Angew Chem Int Ed Engl       Date:  2020-01-28       Impact factor: 15.336

6.  The importance of using the optimal plasticware and glassware in studies involving peptides.

Authors:  Miriam Goebel-Stengel; Andreas Stengel; Yvette Taché; Joseph R Reeve
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7.  Improved Single-Cell Proteome Coverage Using Narrow-Bore Packed NanoLC Columns and Ultrasensitive Mass Spectrometry.

Authors:  Yongzheng Cong; Yiran Liang; Khatereh Motamedchaboki; Romain Huguet; Thy Truong; Rui Zhao; Yufeng Shen; Daniel Lopez-Ferrer; Ying Zhu; Ryan T Kelly
Journal:  Anal Chem       Date:  2020-01-21       Impact factor: 6.986

8.  Ultrasmall sample biochemical analysis.

Authors:  Ryan T Kelly; Ying Zhu
Journal:  Anal Bioanal Chem       Date:  2019-08       Impact factor: 4.142

9.  Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells.

Authors:  Ying Zhu; Paul D Piehowski; Rui Zhao; Jing Chen; Yufeng Shen; Ronald J Moore; Anil K Shukla; Vladislav A Petyuk; Martha Campbell-Thompson; Clayton E Mathews; Richard D Smith; Wei-Jun Qian; Ryan T Kelly
Journal:  Nat Commun       Date:  2018-02-28       Impact factor: 14.919

10.  Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution.

Authors:  Paul D Piehowski; Ying Zhu; Lisa M Bramer; Kelly G Stratton; Rui Zhao; Daniel J Orton; Ronald J Moore; Jia Yuan; Hugh D Mitchell; Yuqian Gao; Bobbie-Jo M Webb-Robertson; Sudhansu K Dey; Ryan T Kelly; Kristin E Burnum-Johnson
Journal:  Nat Commun       Date:  2020-01-07       Impact factor: 14.919

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  1 in total

1.  Open-source personal pipetting robots with live-cell incubation and microscopy compatibility.

Authors:  Philip Dettinger; Tobias Kull; Geethika Arekatla; Nouraiz Ahmed; Yang Zhang; Florin Schneiter; Arne Wehling; Daniel Schirmacher; Shunsuke Kawamura; Dirk Loeffler; Timm Schroeder
Journal:  Nat Commun       Date:  2022-05-30       Impact factor: 17.694

  1 in total

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