| Literature DB >> 33205069 |
Mark R Davies1, Michael Martinec2, Robert Walls2, Roman Schwarz3, Gary R Mirams4, Ken Wang5, Guido Steiner5, Andy Surinach6, Carlos Flores6, Thierry Lavé5, Thomas Singer5, Liudmila Polonchuk5.
Abstract
There is an increasing expectation that computational approaches may supplement existing human decision-making. Frontloading of models for cardiac safety prediction is no exception to this trend, and ongoing regulatory initiatives propose use of high-throughput in vitro data combined with computational models for calculating proarrhythmic risk. Evaluation of these models requires robust assessment of the outcomes. Using FDA Adverse Event Reporting System reports and electronic healthcare claims data from the Truven-MarketScan US claims database, we quantify the incidence rate of arrhythmia in patients and how this changes depending on patient characteristics. First, we propose that such datasets are a complementary resource for determining relative drug risk and assessing the performance of cardiac safety models for regulatory use. Second, the results suggest important determinants for appropriate stratification of patients and evaluation of additional drug risk in prescribing and clinical support algorithms and for precision health.Entities:
Keywords: arrhythmia; cardiac safety; drug development; in silico models; real world data
Mesh:
Substances:
Year: 2020 PMID: 33205069 PMCID: PMC7659582 DOI: 10.1016/j.xcrm.2020.100076
Source DB: PubMed Journal: Cell Rep Med ISSN: 2666-3791
Figure 1Adverse Cardiac Events Being Reported over Time
Number of cardiac-related adverse events per year of event or year of submitted report from FAERS reports extracted from Pharmapendium (Elsevier).
Ranking of CiPA Drugs by Disproportionality (EB05) for Cardiac Adverse Events
| Generic Drug Name | EB05 TdP | EB05 VT | EB05 VA | CiPA Classification | CredibleMeds Classification | hERG IC50/Free Cmax Ratio | Drug Class |
|---|---|---|---|---|---|---|---|
| Ibutilide | 218.45 | 101.022 | 2.901 | high | risk of TdP | 3.37 | anti-arrhythmic |
| Azimilide | 94.351 | 1.381 | NC | high | NC | 11.50 | anti-arrhythmic |
| Bepridil | 81.663 | 38.276 | 5.155 | high | risk of TdP | 1.42 | anti-anginal |
| Sotalol | 70.355 | 18.029 | 14.276 | high | risk of TdP | 17.2 | anti-arrhythmic |
| Methadone | 36.408 | 3.998 | 1.87 | high | risk of TdP | 4.90 | opiate |
| Quinidine | 35.667 | 12.296 | 2.768 | high | risk of TdP | 0.92 | anti-arrhythmic |
| Cisapride | 30.654 | 21.801 | 5.117 | intermediate | risk of TdP | 8.25 | gastro-intestinal stimulant |
| Terfenadine | 24.417 | 9.397 | 3.085 | intermediate | risk of TdP | 0.41 | antihistamine |
| Flecainide | 23.364 | 20.567 | 4.123 | very low | risk of TdP | 59.01 | anti-arrhythmic |
| Ranolazine | 22.444 | 4.375 | 0.205 | very low | conditional risk of TdP | 2.69 | anti-anginal |
| Dofetilide | 20.983 | 14.397 | 6.235 | high | risk of TdP | 4.36 | anti-arrhythmic |
| Droperidol | 19.454 | 4.564 | 2.899 | intermediate | risk of TdP | 11.46 | anti-psychotic/anti-emetic |
| Domperidone | 18.85 | 1.468 | 1.455 | intermediate | risk of TdP | 810.98 | anti-emetic |
| Astemizole | 18.549 | 15.499 | 1.965 | intermediate | risk of TdP | 24.55 | antihistamine |
| Pimozide | 17.093 | 2.332 | 0.25 | intermediate | risk of TdP | 16.60 | anti-psychotic |
| Ondansetron | 15.333 | 6.395 | 1.281 | intermediate | risk of TdP | 62.62 | anti-emetic |
| Clarithromycin | 7.69 | 3.016 | 1.898 | intermediate | risk of TdP | 77.41 | antibiotic |
| Chlorpromazine | 5.483 | 1.78 | 0.679 | intermediate | risk of TdP | 64.71 | anti-psychotic/anti-emetic |
| Loratadine | 4.873 | 3.043 | 0.583 | very low | NC | 11111.11 | antihistamine |
| Verapamil | 3.426 | 2.381 | 2.104 | very low | NC | 7.35 | anti-hypertensive |
| Metoprolol | 3.176 | 3.318 | 1.955 | very low | NC | 326.06 | adrenoceptor antagonist |
| Mexiletine | 2.649 | 10.083 | 3.986 | very low | NC | 130.11 | neuromuscular blocking agent |
| Diltiazem | 2.62 | 1.443 | 0.925 | very low | NC | 210.42 | anti-arrhythmic |
| Risperidone | 1.257 | 0.706 | 0.543 | intermediate | possible risk of TdP | 176.99 | anti-psychotic, atypical |
| Nitrendipine | 0.618 | 0.228 | NC | very low | NC | 50345 | anti-hypertensive |
| Vandetanib | 0.546 | NC | NC | high | risk of TdP | 2.45 | anti-cancer |
| Nifedipine | 0.391 | 0.42 | 0.76 | very low | NC | 1754.4 | anti-hypertensive |
| Clozapine | 0.191 | 0.291 | 0.372 | intermediate | possible risk of TdP | 7.06 | anti-psychotic, atypical |
| Tamoxifen | 0.077 | 0.172 | 0.06 | very low | possible risk of TdP | 284.1 | anti-cancer |
NC, not classified. The hERG IC50/free Cmax ratio is derived from experimental hERG data and supplemented with prior published values;,36, 37, 38, 39, see Data S3 for full details. Typically, a threshold of 30 is regarded as a cutoff between high- and low-risk drugs. Abbreviations for EB05 values are as follows: TdP, torsades de pointes; VT, ventricular tachycardia; VA, ventricular arrhythmia. CredibleMeds classification and drug classification were correct as of the date of last access (May 22, 2018; http://crediblemeds.org/index.php/login/dlcheck).
Figure 2Distribution of the Extended Compound Set for TdP and VT FAERS Reports (Empirica-Derived Data)
(A and B) The axes show EB05 values for the indicated MedDRA code, and each spot represents one of the selected compounds. Horizontal and vertical red lines show EB05 threshold = 2. The same data are shown in both plots with different highlighting that represents (A) CiPA classification and (B) hERG IC50/free Cmax. Arrows indicate drugs showing concordance (Con), discordance (Dis), or unknown (Un) between, e.g., hERG IC50/free Cmax ratio, CiPA, and the EBGM score (also presented in Table 1). A full list of drugs labeled in the order of Data S3 is presented in Figure S2.
See also Data S1.
Figure 3Translation of Different Ranking Strategies of the Observed Claims Data (from MarketScan)
(A and B) Individual drugs (spots) are overlaid with color for the following reference markers: (A) CiPA ranking and (B) hERG IC50/free Cmax ratio. Drugs with a total patient exposure of less than 100 patient years were excluded from the analysis.
See also Data S2 and S3.
Figure 4Concordance of Safety Signals
(A) logarithmic plots of hERG IC50/free Cmax (triangles) and EB05 for TdP (circles, obtained from FAERS). Compounds were sorted by their EB05 values from large to small.
(B) logarithmic plots of hERG IC50/free Cmax and normalized incidence rate for CD (obtained from MarketScan). Compounds were sorted by normalized incidence rate from large to small.
(A) and (B) Points are color coded by CiPA classification; compounds that were not included in the CiPA list are colored in gray. Note that –log function was applied for the safety margin ratio transformation to account for the compound sorting. A linear regression of hERG IC50/free Cmax values by compound rank (as ordered by the respective other variable) is indicated with a red line and the corresponding 95% prediction interval with a shaded area.
Figure 5Stratification of Patient Subtypes Shows Differences in the Incidence of CD
A scatterplot of CD rates shows incidence rate differences between patient subgroups (split into up to 32 individual subtypes based on age, gender, and comorbidity index) for 3 exemplar drugs of high incidence, mixed incidence, and low incidence, derived from the MarketScan claims database. Colors represent different age groups for patients: green, patients younger than 18 years; yellow, between 18 and 45 years; orange, between 45 and 65 years; red, over 65 years. Dashed lines represent the mean incidence rates across all drugs for these age groups together with the overall mean incidence rate (black dashed line), as seen in Table S2.
Selected Drugs Exhibiting Concordance or Discordance across Different Risk Classification Schemes or Drugs that Are Currently Uncategorized and where Novel Quantitative Metrics Could Be Supportive
| Drug | CD incidence | Incidence Rate per 1,000 Years | Delta from Background Rate | CiPA Classification | CredibleMeds | hERG IC50/Free Cmax Ratio | EB05 | Drug Class |
|---|---|---|---|---|---|---|---|---|
| Dofetilide | 2,749 | 157.58 | 134.58 | high | risk of TdP | 4.36 | 20.98 | anti-arrhythmic |
| Loratadine | 2,016 | 13.07 | −9.93 | very low | N/A | 11,111.1 | 4.87 | antihistamine |
| Nifedipine | 8,563 | 20.27 | −2.73 | very low | N/A | 1,754.4 | 0.39 | calcium channel blocker |
| Quinidine | 421 | 87.75 | 64.75 | high | risk of TdP | 0.92 | 35.67 | anti-arrhythmic |
| Sotalol | 13,186 | 124.65 | 101.65 | high | risk of TdP | 17.2 | 70.36 | anti-arrhythmic |
| Amiodarone | 21,788 | 162.2 | 139.2 | N/A | risk of TdP | 737.1 | 21.35 | anti-arrhythmic |
| Methadone | 1,662 | 19.73 | −3.27 | high | risk of TdP | 4.9 | 36.41 | opiate |
| Mexiletine | 1,250 | 280.45 | 257.45 | very low | N/A | 130.11 | 2.65 | anti-arrhythmic |
| Paliperidone | 119 | 10.13 | −12.87 | N/A | possible risk of TdP | 87.0 | 0.57 | anti-psychotic |
| Risperidone | 4,066 | 18.47 | −4.53 | intermediate | possible risk of TdP | 176.99 | 1.26 | anti-psychotic |
| Desvenlafaxine | 2,222 | 8.26 | −14.74 | N/A | N/A | N/A | 0.13 | antidepressants |
| Propafenone | 6,643 | 135.17 | 112.17 | N/A | N/A | N/A | 3.38 | anti-arrhythmic |
Propafenone was added (March 1, 2018) to the CredibleMeds listing as having a conditional risk for TdP.
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| CaCl2 | Acros | AC349615000; CAS Number 10043-52-4 |
| EGTA | Sigma-Aldrich | 0396; CAS Number 67-42-5 |
| HEPES | Applichem | A1069,0500; CAS Number 7365-45-9 |
| KCl | Acros | 193780010; CAS Number 7447-40-7 |
| KF | Acros | 449148; CAS Number 7789-23-3 |
| KOH | Sigma-Aldrich | 417661; CAS Number 1310-58-3 |
| NaCl | Merck | 106404; CAS Number 7647-14-5 |
| NaOH | Sigma-Aldrich | 72068; CAS Number: 1310-73-2 |
| MgCl2 | Sigma-Aldrich | 442611; CAS Number 7791-18-6 |
| ALPRAZOLAM | TRC | A575650; CAS Number 125316-83-8 |
| AMIODARONE | Sigma-Aldrich | A-8423; CAS Number 19774-82-4 |
| ASTEMIZOLE | Sigma-Aldrich | A-6424; CAS Number 68844-77-9 |
| AZIMILIDE | TRC Canada | A926950; CAS Number149888-94-8 |
| BEPRIDIL | Sigma-Aldrich | B-5016; CAS Number 74764-40-2 |
| CAPTOPRIL | Sigma-Aldrich | 21751; CAS Number 62571-86-2 |
| CHLORPROMAZINE | AKSCi | J11680; CAS Number 69-09-0 |
| CIPROFLOXACIN | LKT Labs | C3262; CAS Number 85721-33-1 |
| CISAPRIDE | Tocris | 1695; CAS Number 81098-60-4 |
| CITALOPRAM | USP | 1134233; CAS Number 59729-32-7 |
| CLARITHROMYCIN | LKT Labs | C4502; CAS Number 81103-11-9 |
| CLOZAPINE | Sigma-Aldrich | C6305; CAS Number 5786-21-0 |
| DASATINIB | Cayman Chemical | 11498; CAS Number 302962-49-8 |
| DILTIAZEM | Sigma-Aldrich | D2521; CAS Number 33286-22-5 |
| DOFETILIDE | Cayman Chemical | Cayman/15045; CAS Number 115256-11-6 |
| DOXORUBICIN | Cayman Chemical | 15007; CAS Number 25316-40-9 |
| DULOXETINE | Roche | RO4500720-000-001 |
| ERLOTINIB | Cayman Chemical | 10483; CAS Number 183321-74-6 |
| ERYTHROMYCIN | ICN Biomedicals | 1890197; CAS Number 114-07-8 |
| FLECAINIDE | Sigma-Aldrich | F-6777; CAS Number 54143-56-5 |
| FLUOXETINE | USP | 1279804; CAS Number 56296-78-7 |
| GREPAFLOXACIN | Roche | RO0661290-000-001 |
| HALOPERIDOL | Sigma-Aldrich | H1512; CAS Number 52-86-8 |
| IBUPROFEN | Euro Pharma | I0020000; CAS Number 15687-27-1 |
| IBUTILIDE | TargetMol | T6541; CAS 122647-32-9 |
| IMATINIB | Sigma-Aldrich | SML1027; CAS Number 220127-57-1 |
| LORATADINE | Fluka | PHR1376; CAS Number 79794-75-5 |
| METHADONE | Roche | RO0021631-000-001 |
| METOPROLOL | Fluka | 80337; CAS Number 56392-17-7 |
| MEXILETINE | Sigma-Aldrich | M2727; CAS Number 5370-01-4 |
| MOXIFLOXACIN | Oakwood Products | 079434; CAS Number 186826-86-8 |
| NIFEDIPINE | Calbiochem | 481981; CAS Number 21829-25-4 |
| NITRENDIPINE | Sigma-Aldrich | N144; CAS Number 39562-70-4 |
| OLANZAPINE | TRC Canada | O253750; CAS Number 132539-06-1 |
| ONDANSETRON | Roche | RO0418459-000-001 |
| PENTAMIDINE | Sigma-Aldrich | P0547; CAS Number 140-64-7 |
| PHENYLEPHRINE | Sigma-Aldrich | P6126; CAS Number 61-76-7 |
| PIMOZIDE | Sigma-Aldrich | P1793; CAS Number 2062-78-4 |
| QUINIDINE | Sigma-Aldrich | Q-0750; CAS Number 6151-40-2 |
| RANOLAZINE | Kemprotec Limited | CAS Number 95635-55-5 |
| RISPERIDONE | USP | 1604654; CAS Number 106266-06-2 |
| SPARFLOXACIN | Fluka | 56968; CAS Number 110871-86-8 |
| TAMOXIFEN | Sigma-Aldrich | T5648; CAS Number 10540-29-1 |
| TERFENADINE | Sigma-Aldrich | T9652; CAS Number 50679-08-8 |
| THIORIDAZINE | Sigma-Aldrich | T9025; CAS Number 130-61-0 |
| VANDETANIB | LC Laboratories | V-9402; CAS Number 443913-73-3 |
| VERAPAMIL | Sigma-Aldrich | V4629; CAS Number 152-11-4 |
| ZIPRASIDONE | Roche | RO0724012-000-001 |
| Hamster: CHO cells | ATCC | PTA-6812 |
| Empirica Signal version 8.1 | Oracle ® Health Sciences | |
| MedDRA version 18.0 | ICH | |
| MarketScan® Commercial Claims and Encounters and Medicare Supplemental and Coordination of Benefits | Truven Health Analytics | |
| R statistical software | R Development Core Team | |
| SAS® | SAS | |