| Literature DB >> 33204295 |
Qi Jin1, Xiao-Feng Hao1, Li-Ke Xie1, Jing Xu1, Mei Sun1, Hang Yuan1, Shi-Hui Wang1, Gai-Ping Wu1, Meng-Lu Miao1.
Abstract
BACKGROUND: Diabetic retinopathy (DR) includes a series of typical lesions affected by retinal microvascular damage caused by diabetes mellitus (DM), which not only seriously damages the vision, affecting the life's quality of patients, but also brings a considerable burden to the family and society. Astragalus Membranaceus (AM) is a commonly used medicine in clinical therapy of eye disorders in traditional Chinese medicine (TCM). In recent years, it is also used for treating DR, but the specific mechanism is unclear. Therefore, this study explores the potential mechanism of AM in DR treatment by using network pharmacology.Entities:
Year: 2020 PMID: 33204295 PMCID: PMC7652614 DOI: 10.1155/2020/8878569
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
Figure 1Flow chart of the study. DR: diabetic retinopathy; AM: Astragalus Membranaceus; TCMSP: Traditional Chinese Medicine Systems Pharmacology Database; GO: Gene Ontology; KEGG: Kyoto Encyclopedia of Genes and Genomes; PPI: protein-protein interaction.
Information of compounds from AM.
| Number | Mol ID | Molecule name | Molecule weight | OB (%) | DL |
|---|---|---|---|---|---|
| 1 | MOL000211 | Mairin | 456.78 | 55.38 | 0.78 |
| 2 | MOL000239 | Jaranol | 314.31 | 50.83 | 0.29 |
| 3 | MOL000296 | Hederagenin | 414.79 | 36.91 | 0.75 |
| 4 | MOL000033 | (3S,8S,9S,10R,13R,14S,17R)-10,13-dimethyl-17-[(2R,5S)-5-propan-2-yloctan-2-yl]-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta (a) phenanthren-3-ol | 428.82 | 36.23 | 0.78 |
| 5 | MOL000354 | Isorhamnetin | 316.28 | 49.6 | 0.31 |
| 6 | MOL000371 | 3,9-di-O-Methylnissolin | 314.36 | 53.74 | 0.48 |
| 7 | MOL000374 | 5′-Hydroxyiso-muronulatol-2′,5′-di-O-glucoside | 642.67 | 41.72 | 0.69 |
| 8 | MOL000378 | 7-O-Methylisomucronulatol | 316.38 | 74.69 | 0.3 |
| 9 | MOL000379 | 9,10-Dimethoxypterocarpan-3-O- | 462.49 | 36.74 | 0.92 |
| 10 | MOL000380 | (6aR,11aR)-9,10-Dimethoxy-6a,11a-dihydro-6H-benzofurano (3,2-c) chromen-3-ol | 300.33 | 64.26 | 0.42 |
| 11 | MOL000387 | Bifendate | 418.38 | 31.1 | 0.67 |
| 12 | MOL000392 | Formononetin | 268.28 | 69.67 | 0.21 |
| 13 | MOL000398 | Isoflavanone | 316.33 | 109.99 | 0.3 |
| 14 | MOL000417 | Calycosin | 284.28 | 47.75 | 0.24 |
| 15 | MOL000422 | Kaempferol | 286.25 | 41.88 | 0.24 |
| 16 | MOL000433 | FA | 441.45 | 68.96 | 0.71 |
| 17 | MOL000438 | (3R)-3-(2-Hydroxy-3,4-dimethoxyphenyl)chroman-7-ol | 302.35 | 67.67 | 0.26 |
| 18 | MOL000439 | Isomucronulatol-7,2′-di-O-glucosiole | 626.67 | 49.28 | 0.62 |
| 19 | MOL000442 | 1,7-Dihydroxy-3,9-dimethoxy pterocarpene | 314.31 | 39.05 | 0.48 |
| 20 | MOL000098 | Quercetin | 302.25 | 46.43 | 0.28 |
| 21 | MOL000401 | Astragaloside I | 869.17 | 46.79 | 0.11 |
| 22 | MOL000403 | Astragaloside II | 827.13 | 46.06 | 0.13 |
| 23 | MOL000405 | Astragaloside III | 785.09 | 31.83 | 0.1 |
| 24 | MOL000407 | Astragaloside IV | 785.09 | 22.5 | 0.15 |
Figure 2C-T network. The layout of the outer ring and the inner rectangular were constructed according to different nodes, and the green nodes represent the compound while blue represents the target; the edges among the nodes represent the relationship between the compound and the targets. The more the edges of nodes, the more important the nodes.
Key compounds of AM.
| Mol ID | Name | DC | CC | BC |
|---|---|---|---|---|
| MOL000422 | Kaempferol | 100 | 0.390867 | 0.078562 |
| MOL000354 | Isorhamnetin | 100 | 0.390867 | 0.070723 |
| MOL000098 | Quercetin | 100 | 0.390867 | 0.070715 |
| MOL000239 | Jaranol | 100 | 0.390263 | 0.09292 |
| MOL000438 | (3R)-3-(2-Hydroxy-3,4-dimethoxyphenyl)chroman-7-ol | 100 | 0.38966 | 0.14801 |
| MOL000398 | Isoflavanone | 100 | 0.38906 | 0.212952 |
| MOL000371 | 3,9-di-O-Methylnissolin | 100 | 0.38727 | 0.212242 |
| MOL000380 | (6aR,11aR)-9,10-Dimethoxy-6a,11a-dihydro-6H-benzofurano (3,2-c)chromen-3-ol | 100 | 0.386677 | 0.13606 |
DC = degree centrality; CC = closeness centrality; BC = betweenness centrality.
Figure 3Common targets of AM and DR. There were 482 targets of AM (left), while 1901 targets of DR (right), and 169 common targets between AM and DR (middle).
Figure 4The process of screening core targets. From 169 common targets (left), selection of 38 core targets with degree ≥ 36 (right).
Figure 5PPI of core targets. The layout of the outer ring went in an anticlockwise direction according to the area and color of the nodes, andthe yellow nodes represent the core targets of AM on DR; the size and transparency of the nodes were divided according to the degree value from large to small. The inner edges represent the relationship between the core targets. The more the edges of the nodes were, the larger the area of the nodes, the darker the color, and the more important the targets.
Specific information for core targets.
| Number | Uniprot ID | Gene name | Protein name | Counts |
|---|---|---|---|---|
| 1 | P31749 | AKT1 | RAC-alpha serine/threonine-protein kinase | 36 |
| 2 | P15692 | VEGFA | Vascular endothelial growth factor A | 37 |
| 3 | P05231 | IL6 | Interleukin-6 | 35 |
| 4 | P42574 | CASP3 | Caspase-3 | 36 |
| 5 | P12931 | SRC | Proto-oncogene tyrosine-protein kinase Src | 35 |
| 6 | P00533 | EGFR | Epidermal growth factor receptor | 31 |
| 7 | P28482 | MAPK1 | Mitogen-activated protein kinase 1 | 35 |
| 8 | P40763 | STAT3 | Signal transducer and activator of transcription 3 | 35 |
| 9 | P05412 | JUN | Transcription factor AP-1 | 33 |
| 10 | P01112 | HRAS | GTPase HRas | 35 |
| 11 | P07900 | HSP90AA1 | Heat shock protein HSP 90-alpha | 32 |
| 12 | P45983 | MAPK8 | Mitogen-activated protein kinase 8 | 32 |
| 13 | P42345 | MTOR | Serine/threonine-protein kinase mTOR | 33 |
| 14 | P24385 | CCND1 | G1/S-specific cyclin-D1 | 33 |
| 15 | P03372 | ESR1 | Estrogen receptor | 33 |
| 16 | P09038 | FGF2 | Fibroblast growth factor 2 | 33 |
| 17 | P14780 | MMP9 | Matrix metalloproteinase-9 | 33 |
| 18 | P35354 | PTGS2 | Prostaglandin G/H synthase 2 | 33 |
| 19 | P37231 | PPARG | Peroxisome proliferator-activated receptor gamma | 25 |
| 20 | P42336 | PIK3CA | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform | 29 |
| 21 | P10275 | AR | Androgen receptor | 29 |
| 22 | P08253 | MMP2 | 72 kDa type IV collagenase | 29 |
| 23 | P35968 | KDR | Vascular endothelial growth factor receptor 2 | 25 |
| 24 | Q09472 | EP300 | Histone acetyltransferase p300 | 27 |
| 25 | P27986 | PIK3R1 | Phosphatidylinositol 3-kinase regulatory subunit alpha | 28 |
| 26 | P60568 | IL2 | Interleukin-2 | 29 |
| 27 | P12821 | ACE | Angiotensin-converting enzyme | 18 |
| 28 | O60674 | JAK2 | Tyrosine-protein kinase JAK2 | 27 |
| 29 | P05067 | APP | Amyloid-beta precursor protein | 23 |
| 30 | Q02750 | MAP2K1 | Dual specificity mitogen-activated protein kinase kinase 1 | 30 |
| 31 | P08069 | IGF1R | Insulin-like growth factor 1 receptor | 26 |
| 32 | P05164 | MPO | Myeloperoxidase | 16 |
| 33 | P23443 | RPS6KB1 | Ribosomal protein S6 kinase beta-1 | 27 |
| 34 | P04150 | NR3C1 | Glucocorticoid receptor | 21 |
| 35 | P10721 | KIT | Mast/stem cell growth factor receptor kit | 23 |
| 36 | P49841 | GSK3B | Glycogen synthase kinase-3 beta | 26 |
| 37 | P11802 | CDK4 | Cyclin-dependent kinase 4 | 23 |
| 38 | P00734 | F2 | Prothrombin | 19 |
Figure 6The top 20 results of KEGG pathway. The larger the area, the more the count, the redder the color, and the smaller the Pvalue.
Figure 7T-P network. The layout of the outer and inner ring went in an anticlockwise direction according to the area and color of the nodes; the green nodes represent the pathways while the blue nodes represent targets. The size and transparency of the nodes were divided according to the degree value from large to small. The inner edges represented the relationship between the pathways and the targets. The more edges, the larger the area of the nodes, the darker of the color, and the more important the nodes.
The main pathway of KEGG.
| Term | Name | BC | CC | DC |
|---|---|---|---|---|
| hsa01521 | EGFR tyrosine kinase inhibitor resistance | 0.23113 | 0.739726 | 35 |
| hsa05200 | Pathways in cancer | 0.094192 | 0.606742 | 27 |
| hsa04933 | AGE-RAGE signaling pathway in diabetic complications | 0.044391 | 0.545455 | 22 |
| hsa04151 | PI3K-Akt signaling pathway | 0.049164 | 0.534653 | 21 |
| hsa05205 | Proteoglycans in cancer | 0.036825 | 0.524272 | 20 |
DC = degree centrality; CC = closeness centrality; BC = betweenness centrality.
Figure 8AGEs-RAGE pathway. Cited from the KEGG database (https://www.kegg.jp/). The position of the yellow icon indicates that AM maybe act as a key node of the pathway.