| Literature DB >> 33198351 |
Seok-Ho Yu1, Laura Pollard1, Tim Wood1, Heather Flanagan-Steet1, Richard Steet1.
Abstract
The lysosomal storage disorder, mucopolysaccharidosis I (MPSI), results from mutations in IDUA, the gene that encodes the glycosaminoglycan-degrading enzyme α-L-iduronidase. Newborn screening efforts for MPSI have greatly increased the number of novel IDUA variants identified, but with insufficient experimental evidence regarding their pathogenicity, many of these variants remain classified as variants of uncertain significance (VUS). Defining pathogenicity for novel IDUA variants is critical for decisions regarding medical management and early intervention. Here, we describe a biochemical platform for the characterization of IDUA variants that relies on viral delivery of IDUA DNA into IDUA-deficient HAP1 cells and isolation of single cell expression clones. The relative specific activity of wild-type and variant α-iduronidase was determined using a combination of Western blot analysis and α-iduronidase activity assays. The specific activity of each variant enzyme was consistent across different single cell clones despite variable IDUA expression and could be accurately determined down to 0.05-0.01% of WT α-iduronidase activity. With this strategy we compared the specific activities of known pseudodeficiency variants (p.His82Gln, p.Ala79Thr, p.Val322Glu, p.Asp223Asn) or pathogenic variants (p.Ser633Leu, p.His240Arg) with variants of uncertain significance (p.Ser586Phe, p.Ile272Leu). The p.Ser633Leu and p.His240Arg variants both show very low activities consistent with their association with Scheie syndrome. In our experiments, however, p.His240Arg exhibited a specific activity five times higher than p.Ser633Leu in contrast to other reports showing equivalent activity. Cell clones expressing the p.Ser586Phe and p.Ile272Leu variants had specific activities in the range of other pseudodeficiency variants tested. Our findings show that pseudodeficiency and pathogenic variants can be distinguished from each other with regard to specific activity, and confirms that all the pseudodeficiency variants variably reduce α-iduronidase activity. We envision this platform will be a valuable resource for the rigorous assessment of the novel IDUA variants emerging from the expansion of newborn screening efforts.Entities:
Keywords: IDUA; mucopolysaccharidosis; newborn screening; pseudodeficiency; α-iduronidase
Year: 2020 PMID: 33198351 PMCID: PMC7711455 DOI: 10.3390/ijns6040088
Source DB: PubMed Journal: Int J Neonatal Screen ISSN: 2409-515X
Figure 1Schematic of the biochemical platform.
Figure 2Validation of the IDUA-KO HAP1 cells and α-iduronidase activity enrichment during the selection process. (A) Enzyme activity in WT and IDUA-KO HAP1 cells compared α-iduronidase activity in IDUA-KO HAP1 cells transfected with WT IDUA cDNA. (B) Enrichment of α-iduronidase activity across different steps of the selection process.
List of IDUA variants and their classification within this study.
| Variant | Classification | References |
|---|---|---|
| p.Ala79Thr | pseudodeficient | [ |
| p.His82Gln | pseudodeficient | [ |
| p.Glu182Lys | Pathogenic (Hurler) | [ |
| p.Asp223Asn | pseudodeficient | [ |
| p. His240Arg | Pathogenic (Scheie) | [ |
| p.Ile272Leu | VUS | N.R. |
| p.Val322Glu | pseudodeficient | [ |
| p.Ser586Phe | VUS | [ |
| p.Ser633Leu | Pathogenic (Scheie) | [ |
Figure 3Determination of the relative specific activity in WT and variant IDUA- expressing cell clones. (A) Relative α-iduronidase activity in cell lysates from different single cell clones. (B) Representative Western blot for α-iduronidase in the cell lysates from these clones. Ponceau S staining was used to confirm equivalent total protein loading. (C) Relative specific activity determination in the clones calculated by dividing relative enzyme activity by relative α-iduronidase abundance as measured by densitometry.
Figure 4Determination of the relative specific activity in WT and variant IDUA-expressing cell clones. (A) Relative α-iduronidase activity in cell lysates from different single cell clones. (B) Representative Western blot for α-iduronidase in the cell lysates from these clones. Ponceau S staining was used to confirm equivalent total protein loading. (C) Relative specific activity determination in the clones calculated by dividing relative enzyme activity by relative α-iduronidase abundance as measured by densitometry.
Figure 5(A) Repeat analysis of the p.His240Arg and p.Ser633Leu variants using two different clones for each variant. Average relative specific activity is shown. Error bars represent standard error of the mean. (B) Summary of relative specific activity for all variants in this study.