| Literature DB >> 33197930 |
Anne Emanuels1, Jessica Heimonen1, Jessica O'Hanlon1, Ashley E Kim1, Naomi Wilcox1, Denise J McCulloch1, Elisabeth Brandstetter1, Caitlin R Wolf1, Jennifer K Logue1, Peter D Han2, Brian Pfau2, Kira L Newman1, James P Hughes3, Michael L Jackson4, Timothy M Uyeki5, Michael Boeckh6, Lea M Starita2,7, Deborah A Nickerson2,7, Trevor Bedford6, Janet A Englund1,8, Helen Y Chu1.
Abstract
BACKGROUND: Noninfluenza respiratory viruses are responsible for a substantial burden of disease in the United States. Household transmission is thought to contribute significantly to subsequent transmission through the broader community. In the context of the coronavirus disease 2019 (COVID-19) pandemic, contactless surveillance methods are of particular importance.Entities:
Keywords: epidemiology; households; respiratory; transmission; viruses
Mesh:
Year: 2021 PMID: 33197930 PMCID: PMC7717193 DOI: 10.1093/cid/ciaa1719
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 20.999
Demographic Characteristics of Households Enrolled in the Seattle Area Between November 2019 and April 2020 With and Without Laboratory-Confirmed Cases of Noninfluenza Respiratory Viral Infection
| Total | Households With No Eligible Respiratory Viral Infection | At Least 1 Confirmed Respiratory Viral Infectiona | ||
|---|---|---|---|---|
| Characteristic | (N = 303) | (n = 118) | (n = 185) |
|
| Households with: | ||||
| Children <5 y | 128 (42) | 31 (26) | 97 (52) | <.001 |
| Children 5–12 y | 202 (67) | 76 (64) | 126 (68) | .716 |
| Children 13–17 y | 64 (21) | 39 (33) | 25 (14) | <.001 |
| Individuals 18–49 y | 280 (92) | 101 (86) | 179 (97) | .002 |
| Individuals 50–64 y | 62 (20) | 39 (33) | 23 (12) | <.001 |
| Individuals ≥65 y | 15 (5) | 4 (3) | 11 (6) | .466 |
| Household size, median (IQR) | 4 (3–4) | 4 (3–4) | 4 (3–4) | .461 |
| All eligible members vaccinated for seasonal influenzac | 192 (63) | 74 (63) | 118 (64) | .947 |
| Household income | .85 | |||
| <$50 000 | 6 (2) | 3 (3) | 3 (2) | |
| $50 000–$100 000 | 44 (15) | 15 (13) | 29 (16) | |
| $100 001–$150 000 | 51 (17) | 20 (17) | 31 (17) | |
| >$150 000 | 174 (57) | 70 (59) | 104 (56) | |
| ≥1 tobacco smoker or e-cigarette user in the home | 8 (3) | 3 (3) | 5 (3) | 1.00 |
| ≥1 individual with history of comorbid condition(s) | ||||
| Asthma | 89 (29) | 36 (31) | 53 (29) | .828 |
| Chronic bronchitis or COPD | 6 (2) | 2 (2) | 4 (2) | .903 |
| Cancer | 20 (7) | 9 (8) | 11 (6) | .736 |
| Diabetes | 7 (2) | 4 (3) | 3 (2) | 1.00 |
| Heart disease | 6 (2) | 2 (2) | 4 (2) | 1.00 |
Data are presented as No. (%) unless otherwise indicated.
Abbreviations: COPD, chronic obstructive pulmonary disease; IQR, interquartile range.
aConfirmed viral infection includes the viruses examined in this analysis: respiratory syncytial virus, parainfluenza virus types 1–4, human metapneumovirus, human rhinovirus, human coronavirus, adenovirus, human bocavirus, and severe acute respiratory syndrome coronavirus 2. Influenza cases are included in the “no eligible infection” column.
b P values generated by χ 2 tests or independent 2-sided t tests.
cIncludes those aged 6 months and older.
Figure 1.Number of households and individuals completing the various steps of study procedures. Abbreviation: ARI, acute respiratory illness.
Cases of Acute Respiratory Illnesses in Seattle Households by Age, Positive Polymerase Chain Reaction Test Result, and Illness Characteristics Between November 2019 and April 2020
| All Samplesa | No Virus Detected | Cases (%) by Positive PCR Test Result | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Characteristic | (N = 611) | (n = 374) | RSV | PIV 1–4 | hMPV | hRV | hCoV | AdV | hBoV | SARS-CoV-2 (n = 4) | Coinfection (n = 30) |
| Age group | |||||||||||
| <5 y | 85 (14) | 23 (6) | 4 (21) | 3 (25) | 2 (29) | 20 (23) | 9 (14) | 4 (40) | 1 (25) | 0 (0) | 19 (63) |
| 5–17 y | 175 (29) | 104 (28) | 6 (32) | 2 (17) | 2 (29) | 32 (37) | 19 (29) | 2 (20) | 1 (25) | 0 (0) | 7 (22) |
| 18–64 y | 346 (57) | 244 (65) | 9 (47) | 7 (58) | 3 (43) | 33 (38) | 36 (55) | 4 (40) | 2 (50) | 4 (100) | 4 (16) |
| ≥65 y | 5 (1) | 3 (1) | 0 (0) | 0 (0) | 0 (0) | 1 (1) | 1 (2) | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
| Sought medical careb | 72 (12) | 44 (12) | 6 (32) | 0 (0) | 3 (43) | 7 (8) | 7 (11) | 2 (20) | 0 (0) | NA | 3 (10) |
| Absent from work or schoolb (n = 421) | 155 (25) | 92 (25) | 8 (42) | 3 (25) | 4 (57) | 20 (23) | 15 (23) | 1 (10) | 1 (25) | NA | 11 (37) |
Data are presented as No. (%). Instances where the same virus with the same symptom onset date was detected in a household are listed as 2 co-primary infections.
Abbreviations: AdV, adenovirus; hBoV, human bocavirus; hCoV, human coronavirus (HKU1, NL63, 229E, and OC43); hMPV, human metapneumovirus; hRV, human rhinovirus; NA, not applicable; PCR, polymerase chain reaction; PIV 1–4, parainfluenza virus types 1–4; RSV, respiratory syncytial virus (types A and B); SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.
aIncludes all samples received during the surveillance period, minus the samples that tested positive for influenza.
bSeeking medical care and absenteeism were missing for 106 (17%) illness episodes. Both of these variables were missing for all cases of SARS-CoV-2 infection.
Figure 2.A, Number of illness samples collected from participants between November 2019 and March 2020. B, Percentage of positive samples detected of different viruses out of the number of samples collected each month. Line color coded by virus type. Cases of coinfection are included twice, once per virus detected. Abbreviations: AdV, adenovirus; hBoV, human bocavirus; hMPV, human metapneumovirus; hRV, human rhinovirus; PIV 1–4, parainfluenza virus types 1–4; RSV, respiratory syncytial virus (types A and B); SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.
Estimated Incidence Rates of Primary and Secondary Cases of 8 Different Viruses Detected Among Seattle Households Between November 2019 and April 2020
| Cases | RSV | PIV 1–4 | hMPV | hRV | hCoV | AdV | hBoV | SARS-CoV-2 |
|---|---|---|---|---|---|---|---|---|
| Primary cases | 18 | 10 | 6 | 73 | 64 | 13 | 10 | 3 |
| Primary incidence rate per 100 PY (95% CI) | 5.4 (3.4–8.6) | 3.0 (1.6–5.6) | 1.8 (.8–4.0) | 21.7 (17.3–27.4) | 19.3 (15.1–24.7) | 4.2 (2.5–7.1) | 3.0 (1.6–5.6) | 1.4 (.8–2.4) |
| Secondary casesa (% of primary) | 5 (28) | 0 (0) | 2 (33) | 19 (26) | 8 (12) | 2 (15) | 0 (0) | 1 (33) |
| Epidemiologic secondary incidence per 100 PY (95% CI) | 79.5 (62.2–102) | 0 | 45.8 (35.8–58.4) | 302 (237–386) | 127 (99.6–163) | 31.8 (24.9–40.6) | 0 | 18.7 (15.1–22.9) |
Instances where the same pathogen with the same symptom onset date were detected in a household are listed in 2 co-primary infections. Coinfections are listed in 2 columns: 1 per virus type.
Abbreviations: AdV, adenovirus; CI, confidence interval; hBoV, human bocavirus; hCoV, human coronavirus (HKU1, NL63, 229E, and OC43); hMPV, human metapneumovirus; hRV, human rhinovirus; PIV 1–4, parainfluenza virus types 1–4; PY, person-years; RSV, respiratory syncytial virus (types A and B); SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.
aSecondary case defined as another instance of the same virus type in the household in the 14 days following a primary infection.
Figure 3.Symptom profiles of respiratory viral illnesses stratified by age group. Includes 209 samples of noninfluenza respiratory viral infection where symptoms were recorded. Darker colors indicate a higher percentage of infected individuals of the specific virus type reporting the symptom. Thirty cases of coinfection are excluded from this figure. Abbreviations: AdV, adenovirus; hBoV, human bocavirus; hCoV, human coronavirus; hMPV, human metapneumovirus; hRV, human rhinovirus; PIV 1–4, parainfluenza virus types 1–4; RSV, respiratory syncytial virus (types A and B).