Literature DB >> 33196967

Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography.

Colin B Hansen1, Qi Yang1, Ilwoo Lyu1,2, Francois Rheault3, Cailey Kerley2, Bramsh Qamar Chandio4, Shreyas Fadnavis4, Owen Williams5, Andrea T Shafer5, Susan M Resnick5, David H Zald6, Laurie E Cutting7, Warren D Taylor7, Brian Boyd7, Eleftherios Garyfallidis4,8, Adam W Anderson9,10, Maxime Descoteaux3, Bennett A Landman1,2, Kurt G Schilling11,12.   

Abstract

Brain atlases have proven to be valuable neuroscience tools for localizing regions of interest and performing statistical inferences on populations. Although many human brain atlases exist, most do not contain information about white matter structures, often neglecting them completely or labelling all white matter as a single homogenous substrate. While few white matter atlases do exist based on diffusion MRI fiber tractography, they are often limited to descriptions of white matter as spatially separate "regions" rather than as white matter "bundles" or fascicles, which are well-known to overlap throughout the brain. Additional limitations include small sample sizes, few white matter pathways, and the use of outdated diffusion models and techniques. Here, we present a new population-based collection of white matter atlases represented in both volumetric and surface coordinates in a standard space. These atlases are based on 2443 subjects, and include 216 white matter bundles derived from 6 different automated state-of-the-art tractography techniques. This atlas is freely available and will be a useful resource for parcellation and segmentation.

Entities:  

Keywords:  Atlas; Tractography; White matter

Mesh:

Year:  2020        PMID: 33196967      PMCID: PMC8124084          DOI: 10.1007/s12021-020-09497-1

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  64 in total

1.  Connectivity-based subdivisions of the human right "temporoparietal junction area": evidence for different areas participating in different cortical networks.

Authors:  Rogier B Mars; Jérôme Sallet; Urs Schüffelgen; Saad Jbabdi; Ivan Toni; Matthew F S Rushworth
Journal:  Cereb Cortex       Date:  2011-09-27       Impact factor: 5.357

2.  A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data.

Authors:  Simon B Eickhoff; Klaas E Stephan; Hartmut Mohlberg; Christian Grefkes; Gereon R Fink; Katrin Amunts; Karl Zilles
Journal:  Neuroimage       Date:  2005-05-01       Impact factor: 6.556

3.  Testing anatomically specified hypotheses in functional imaging using cytoarchitectonic maps.

Authors:  Simon B Eickhoff; Stefan Heim; Karl Zilles; Katrin Amunts
Journal:  Neuroimage       Date:  2006-06-14       Impact factor: 6.556

4.  Reproducibility of quantitative tractography methods applied to cerebral white matter.

Authors:  Setsu Wakana; Arvind Caprihan; Martina M Panzenboeck; James H Fallon; Michele Perry; Randy L Gollub; Kegang Hua; Jiangyang Zhang; Hangyi Jiang; Prachi Dubey; Ari Blitz; Peter van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2007-03-20       Impact factor: 6.556

5.  Combined tract segmentation and orientation mapping for bundle-specific tractography.

Authors:  Jakob Wasserthal; Peter F Neher; Dusan Hirjak; Klaus H Maier-Hein
Journal:  Med Image Anal       Date:  2019-09-12       Impact factor: 8.545

6.  A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM).

Authors:  J Mazziotta; A Toga; A Evans; P Fox; J Lancaster; K Zilles; R Woods; T Paus; G Simpson; B Pike; C Holmes; L Collins; P Thompson; D MacDonald; M Iacoboni; T Schormann; K Amunts; N Palomero-Gallagher; S Geyer; L Parsons; K Narr; N Kabani; G Le Goualher; D Boomsma; T Cannon; R Kawashima; B Mazoyer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-08-29       Impact factor: 6.237

Review 7.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

8.  Clustering of Whole-Brain White Matter Short Association Bundles Using HARDI Data.

Authors:  Claudio Román; Miguel Guevara; Ronald Valenzuela; Miguel Figueroa; Josselin Houenou; Delphine Duclap; Cyril Poupon; Jean-François Mangin; Pamela Guevara
Journal:  Front Neuroinform       Date:  2017-12-22       Impact factor: 4.081

9.  Human Motor Thalamus Reconstructed in 3D from Continuous Sagittal Sections with Identified Subcortical Afferent Territories.

Authors:  Igor Ilinsky; Andreas Horn; Perrine Paul-Gilloteaux; Pierre Gressens; Catherine Verney; Kristy Kultas-Ilinsky
Journal:  eNeuro       Date:  2018-07-04

10.  101 labeled brain images and a consistent human cortical labeling protocol.

Authors:  Arno Klein; Jason Tourville
Journal:  Front Neurosci       Date:  2012-12-05       Impact factor: 4.677

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  6 in total

1.  TractEM: Evaluation of protocols for deterministic tractography white matter atlas.

Authors:  Francois Rheault; Roza G Bayrak; Xuan Wang; Kurt G Schilling; Jasmine M Greer; Colin B Hansen; Cailey Kerley; Karthik Ramadass; Lucas W Remedios; Justin A Blaber; Owen Williams; Lori L Beason-Held; Susan M Resnick; Baxter P Rogers; Bennett A Landman
Journal:  Magn Reson Imaging       Date:  2021-10-16       Impact factor: 2.546

2.  Learning white matter subject-specific segmentation from structural MRI.

Authors:  Qi Yang; Colin B Hansen; Leon Y Cai; Francois Rheault; Ho Hin Lee; Shunxing Bao; Bramsh Qamar Chandio; Owen Williams; Susan M Resnick; Eleftherios Garyfallidis; Adam W Anderson; Maxime Descoteaux; Kurt G Schilling; Bennett A Landman
Journal:  Med Phys       Date:  2022-02-07       Impact factor: 4.506

Review 3.  Quantitative mapping of the brain's structural connectivity using diffusion MRI tractography: A review.

Authors:  Fan Zhang; Alessandro Daducci; Yong He; Simona Schiavi; Caio Seguin; Robert E Smith; Chun-Hung Yeh; Tengda Zhao; Lauren J O'Donnell
Journal:  Neuroimage       Date:  2022-01-01       Impact factor: 7.400

4.  Prevalence of white matter pathways coming into a single white matter voxel orientation: The bottleneck issue in tractography.

Authors:  Kurt G Schilling; Chantal M W Tax; Francois Rheault; Bennett A Landman; Adam W Anderson; Maxime Descoteaux; Laurent Petit
Journal:  Hum Brain Mapp       Date:  2021-12-17       Impact factor: 5.399

5.  Population-based tract-to-region connectome of the human brain and its hierarchical topology.

Authors:  Fang-Cheng Yeh
Journal:  Nat Commun       Date:  2022-08-22       Impact factor: 17.694

6.  MASiVar: Multisite, multiscanner, and multisubject acquisitions for studying variability in diffusion weighted MRI.

Authors:  Leon Y Cai; Qi Yang; Praitayini Kanakaraj; Vishwesh Nath; Allen T Newton; Heidi A Edmonson; Jeffrey Luci; Benjamin N Conrad; Gavin R Price; Colin B Hansen; Cailey I Kerley; Karthik Ramadass; Fang-Cheng Yeh; Hakmook Kang; Eleftherios Garyfallidis; Maxime Descoteaux; Francois Rheault; Kurt G Schilling; Bennett A Landman
Journal:  Magn Reson Med       Date:  2021-07-16       Impact factor: 3.737

  6 in total

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