Literature DB >> 33196063

Quantifying Tensor Field Similarity With Global Distributions and Optimal Transport.

Arnold D Gomez1, Maureen L Stone2, Philip V Bayly3, Jerry L Prince1.   

Abstract

Strain tensor fields quantify tissue deformation and are important for functional analysis of moving organs such as the heart and the tongue. Strain data can be readily obtained using medical imaging. However, quantification of similarity between different data sets is difficult. Strain patterns vary in space and time, and are inherently multidimensional. Also, the same type of mechanical deformation can be applied to different shapes; hence, automatic quantification of similarity should be unaffected by the geometry of the objects being deformed. This work introduces the application of global distributions used to classify shapes and vector fields in the pattern recognition literature, in the context of tensorial strain data. In particular, the distribution of mechanical properties of a field are approximated using a 3D histogram, and the Wasserstein distance from optimal transport theory is used to measure the similarity between histograms. To measure the method's consistency in matching deformations across different objects, the proposed approach was evaluated by sorting strain fields according to their similarity. Performance was compared to sorting via maximum shear distribution (a 1D histogram) and tensor residual magnitude (in perfectly registered objects). The technique was also applied to correlate muscle activation to muscular contraction observed via tagged MRI. The results show that the proposed approach accurately matches deformation regardless of the shape of the object being deformed. Sorting accuracy surpassed 1D shear distribution and was on par with residual magnitude, but without the need for registration between objects.

Entities:  

Keywords:  organ deformation; strain; tagged MRI; tensor fields

Year:  2018        PMID: 33196063      PMCID: PMC7658392          DOI: 10.1007/978-3-030-00934-2_48

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  15 in total

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2.  Measuring tongue motion from tagged cine-MRI using harmonic phase (HARP) processing.

Authors:  Vijay Parthasarathy; Jerry L Prince; Maureen Stone; Emi Z Murano; Moriel Nessaiver
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3.  Statistical analysis of tensor fields.

Authors:  Yuchen Xie; Baba C Vemuri; Jeffrey Ho
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

Review 4.  Myocardial tagging by cardiovascular magnetic resonance: evolution of techniques--pulse sequences, analysis algorithms, and applications.

Authors:  El-Sayed H Ibrahim
Journal:  J Cardiovasc Magn Reson       Date:  2011-07-28       Impact factor: 5.364

Review 5.  Validation of computational models in biomechanics.

Authors:  H B Henninger; S P Reese; A E Anderson; J A Weiss
Journal:  Proc Inst Mech Eng H       Date:  2010       Impact factor: 1.617

Review 6.  Quantitative imaging methods for the development and validation of brain biomechanics models.

Authors:  Philip V Bayly; Erik H Clayton; Guy M Genin
Journal:  Annu Rev Biomed Eng       Date:  2012-05-21       Impact factor: 9.590

7.  A Three-Dimensional Computational Human Head Model That Captures Live Human Brain Dynamics.

Authors:  Shailesh Ganpule; Nitin P Daphalapurkar; Kaliat T Ramesh; Andrew K Knutsen; Dzung L Pham; Philip V Bayly; Jerry L Prince
Journal:  J Neurotrauma       Date:  2017-04-10       Impact factor: 5.269

8.  Construction of An Unbiased Spatio-Temporal Atlas of the Tongue During Speech.

Authors:  Jonghye Woo; Fangxu Xing; Junghoon Lee; Maureen Stone; Jerry L Prince
Journal:  Inf Process Med Imaging       Date:  2015

9.  3D nonrigid registration via optimal mass transport on the GPU.

Authors:  Tauseef Ur Rehman; Eldad Haber; Gallagher Pryor; John Melonakos; Allen Tannenbaum
Journal:  Med Image Anal       Date:  2008-12-07       Impact factor: 8.545

10.  Motion Estimation with Finite-Element Biomechanical Models and Tracking Constraints from Tagged MRI.

Authors:  Arnold David Gomez; Fanxu Xing; Deva Chan; Dzung Pham; Philip Bayly; Jerry Prince
Journal:  Comput Biomech Med Algorithms Models Appl (2017)       Date:  2017-05
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  3 in total

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Authors:  Arnold D Gomez; Maureen L Stone; Jonghye Woo; Fangxu Xing; Jerry L Prince
Journal:  Comput Methods Biomech Biomed Engin       Date:  2020-02-07       Impact factor: 1.763

2.  Group characterization of impact-induced, in vivo human brain kinematics.

Authors:  Arnold D Gomez; Philip V Bayly; John A Butman; Dzung L Pham; Jerry L Prince; Andrew K Knutsen
Journal:  J R Soc Interface       Date:  2021-06-23       Impact factor: 4.293

Review 3.  MR Imaging of Human Brain Mechanics In Vivo: New Measurements to Facilitate the Development of Computational Models of Brain Injury.

Authors:  Philip V Bayly; Ahmed Alshareef; Andrew K Knutsen; Kshitiz Upadhyay; Ruth J Okamoto; Aaron Carass; John A Butman; Dzung L Pham; Jerry L Prince; K T Ramesh; Curtis L Johnson
Journal:  Ann Biomed Eng       Date:  2021-07-01       Impact factor: 4.219

  3 in total

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