| Literature DB >> 33195404 |
Amin Safa1,2, Mir Davood Omrani3, Fwad Nicknafs3, Alireza Komaki4, Mohammad Taheri5, Soudeh Ghafouri-Fard3.
Abstract
BACKGROUND: Molybdenum cofactor sulfurase (MOCOS) is an enzyme participating in purine metabolism. The aim of current study was to evaluate the role of a single nucleotide polymorphism (SNP) in the coding gene (rs594445) in mood disorders and methamphetamine addiction.Entities:
Keywords: bipolar disorder; major depressive disorder; methamphetamine addiction; molybdenum cofactor sulfurase; rs594445
Year: 2020 PMID: 33195404 PMCID: PMC7542180 DOI: 10.3389/fmolb.2020.540375
Source DB: PubMed Journal: Front Mol Biosci ISSN: 2296-889X
General features of the rs594445 SNP.
| SNP | Position | Minor allele | Minor allele frequency | Minor allele count | Type |
| rs594445 | Chr 18:36251226 | A | 0.2228 | 1116 | coding_sequence_variant, missense_variant |
Nucleotide sequence of primers and PCR conditions (F: forward, R: reverse, i: inner, o: outer).
| Primer names | Primer sequences | Annealing temperature | Expected amplicon sizes | |
| Fo | ATTTTGTAACCAAACTTTTAGCAATTCAGA | 59 | Outer | 358 |
| Ro | GTGCAGTAGGTTTCTCCTAAAGGCT | |||
| Fi (A) | GTCAACATTTTTTCGCCGTCCTTATA | Fi (A) | 229 | |
| Ri (C) | TTGAGAGTTTGAACTTTGTTAGATCAAGTG | Ri (C) | 184 | |
General characteristics of study participants.
| Variable | BPD1 | BPD2 | MDD | Control | Addiction | Control |
| Age (mean ± SD) | 42 ± 4.2 | 42 ± 7.6 | 49 ± 1.0 | 47 ± 5.4 | 36.43 ± 9.79 | 37.76 ± 9.6 |
| Gender | ||||||
| Female | 50 | 42 | 14 | 120 | 0 | 0 |
| Male | 35 | 36 | 19 | 80 | 200 | 200 |
| Total | 85 | 78 | 33 | 200 | 200 | 200 |
Frequencies of the different alleles of rs594445 in patients and controls.
| Addiction cohort | Mood disorders cohort | |||||
| Allele | Cases | Controls | BP1 | BP2 | MDD | Controls |
| C | 285 | 246 | 108 | 107 | 47 | 246 |
| A | 115 | 154 | 62 | 49 | 19 | 154 |
| Total | 400 | 400 | 170 | 156 | 66 | 400 |
Compliance of genotype frequencies of the rs594445 with HWE.
| Genotype | C/C | C/A | A/A | Total | ||
| Addiction cohort | Case | 106 | 73 | 21 | 200 | 0.122932 |
| Control | 80 | 86 | 34 | 200 | 0.193402 | |
| Mood disorders cohort | BP1 | 44 | 20 | 21 | 85 | 0.000006 |
| BP2 | 38 | 31 | 9 | 78 | 0.492974 | |
| MDD | 18 | 11 | 4 | 33 | 0.456803 | |
| Control | 80 | 86 | 34 | 200 | 0.193402 |
Associations between methamphetamine addiction and rs594445 SNP in four inheritance models.
| Model | Genotype | Control | Case | OR (95% CI) | |||
| A/A Number (%) | C/C Number (%) | A/A Number (%) | C/C Number (%) | ||||
| Co-dominant | A/A vs C/C | 34 (0.170) | 80 (0.400) | 21 (0.105) | 106 (0.530) | 0.466 (0.252–0.864) | 0.014 |
| C/A vs C/C | 86 (0.430) | 80 (0.400) | 73 (0.365) | 106 (0.530) | 0.641 (0.418–0.981) | 0.04 | |
| Dominant | C/A + A/A vs C/C | 120 (0.600) | 80 (0.400) | 94 (0.470) | 106 (0.530) | 0.591 (0.398–0.879) | 0.009 |
| Recessive | A/A vs C/A + C/C | 34 (0.170) | 166 (0.830) | 21 (0.105) | 179 (0.895) | 0.573 (0.32–1.027) | 0.059 |
| Allelic | A vs C | 154 (0.385) | 246 (0.615) | 115 (0.288) | 285 (0.713) | 0.645 (0.48–0.866) | 0.004 |
Associations between BP1 and rs594445 SNP in four inheritance models.
| Model | Genotype | Control | Case | OR (95% CI) | |||
| A/A Number (%) | C/C Number (%) | A/A Number (%) | C/C Number (%) | ||||
| Co-dominant | A/A vs C/C | 34 (0.170) | 80 (0.400) | 21 (0.247) | 44 (0.518) | 1.123 (0.582–2.166) | 0.729 |
| C/A vs C/C | 86 (0.430) | 80 (0.400) | 20 (0.235) | 44 (0.518) | 0.423 (0.230–0.778) | 0.005 | |
| Dominant | C/A + A/A vs C/C | 120 (0.600) | 80 (0.400) | 41 (0.482) | 44 (0.518) | 0.621 (0.373–1.035) | 0.067 |
| Recessive | A/A vs C/A + C/C | 34 (0.170) | 166 (0.830) | 21 (0.247) | 64 (0.753) | 1.602 (0.866–2.965) | 0.132 |
| Allelic | A vs C | 154 (0.385) | 246 (0.615) | 62 (0.365) | 108 (0.635) | 0.917 (0.632–1.33) | 0.648 |
Associations between BP2 and rs594445 SNP in four inheritance models.
| Model | Genotype | Control | Case | OR (95% CI) | |||
| A/A Number (%) | C/C Number (%) | A/A Number (%) | C/C Number (%) | ||||
| Co-dominant | A/A vs C/C | 34 (0.170) | 80 (0.400) | 9 (0.115) | 38 (0.487) | 0.557 (0.243–1.278) | 0.164 |
| C/A vs C/C | 86 (0.430) | 80 (0.400) | 31 (0.397) | 38 (0.487) | 0.759 (0.432–1.333) | 0.337 | |
| Dominant | C/A + A/A vs C/C | 120 (0.600) | 80 (0.400) | 40 (0.513) | 38 (0.487) | 0.702 (0.415–1.188) | 0.19 |
| Recessive | A/A vs C/A + C/C | 34 (0.170) | 166 (0.830) | 9 (0.115) | 69 (0.885) | 0.637 (0.29–1.398) | 0.26 |
| Allelic | A vs C | 154 (0.385) | 246 (0.615) | 49 (0.314) | 107 (0.686) | 0.732 (0.494–1.084) | 0.12 |
Associations between MDD and rs594445 SNP in four inheritance models.
| Model | Genotype | Control | Case | OR (95% CI) | |||
| A/A Number (%) | C/C Number (%) | A/A Number (%) | C/C Number (%) | ||||
| Co-dominant | A/A vs C/C | 34 (0.170) | 80 (0.400) | 4 (0.121) | 18 (0.545) | 0.523 (0.165–1.660) | 0.265 |
| C/A vs C/C | 86 (0.430) | 80 (0.400) | 11 (0.333) | 18 (0.545) | 0.568 (0.253–1.277) | 0.168 | |
| Dominant | C/A + A/A vs C/C | 120 (0.600) | 80 (0.400) | 15 (0.455) | 18 (0.545) | 0.556 (0.265–1.166) | 0.12 |
| Recessive | A/A vs C/A + C/C | 34 (0.170) | 166 (0.830) | 4 (0.121) | 29 (0.879) | 0.673 (0.222–2.041) | 0.48 |
| Allelic | A vs C | 154 (0.385) | 246 (0.615) | 19 (0.288) | 47 (0.712) | 0.646 (0.365–1.141) | 0.13 |