| Literature DB >> 33194326 |
Zhifang Ma1, Jie Chen2, Ting Luan2, Chengzhuo Chu1, Wangfei Wu1, Yichao Zhu3,4, Yun Gu1.
Abstract
BACKGROUND: Cervical cancer is the most common gynecological cancer, encompassing cervical squamous cell carcinoma, adenocarcinoma, and other epithelial tumors. There are many diagnostic methods to detect cervical cancers but no precision screening tool for cervical adenocarcinoma at present.Entities:
Keywords: Biomarkers; Cervical adenocarcinoma; Mucus; Proteomics
Year: 2020 PMID: 33194326 PMCID: PMC7394065 DOI: 10.7717/peerj.9527
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Patient information of samples used in the comprehensive proteomic experiments.
| Sample | Age (years old) | FIGO stage | Lesion size (mm) | Depth of invasion | Immunohistochemical diagnosis | Chief complaint | TCT | HPV |
|---|---|---|---|---|---|---|---|---|
| Ctrl-1 | 49 | Normal | Routine physical | − | − | |||
| Ctrl-2 | 44 | Normal | Routine physical | − | − | |||
| Ctrl-3 | 40 | Normal | Routine physical | − | − | |||
| AIS-1 | 36 | 0 | 2.3 | Ki67(70%+), P16(+), ER(−) | Cervical lesions | ASC-H | + | |
| AIS-2 | 32 | 0 | 2 | Ki67(90%+), P16(+), ER(−) | Vaginal bleeding after intercourse | + | + | |
| AIS-3 | 43 | 0 | <7 | Ki67(50%+), P16(+), ER(+) | Cervical lesions | − | + | |
| EA-1 | 54 | II A1 | 12 | >1/3 & <2/3 | Ki67(60%+), P16(+), ER(−) | Vaginal bleeding after menopause | NK | NK |
| EA-2 | 37 | I B2 | ≤20 | >1/3 & <2/3 | Ki67(2%+), P16(++), ER(+) | Menstrual disorder and abnormal leukorrhea | ASC-US | + |
| EA-3 | 34 | II A1 | 30 | >1/3 & <2/3 | Ki67(80%+), P16(−), ER(−) | Vaginal bleeding after intercourse | HSIL | + |
Note:
Ctrl indicates the normal cervix; AIS indicates adenocarcinoms in situ of the cervical; EA indicates endocervical adenocarcinoma; TCT, Thinprep cytology test; HPV, human papillomavirus; −, negative; +, positive; NK, not known; ASC-H, atypical squamous cells: cannot exclude high-grade squamous intraepithelial lesion; ASC-US, atypical squamous cells of undetermined significance; HSIL, high-grade squamous intraepithelial lesions.
Figure 1Identification of proteins related to cervical mucus.
(A–C), pathological section analysis of normal cervical mucus (HE, ×200); (D–F), pathological section analysis of cervical adenocarcinoma mucus in situ (HE, ×200); (G–I), pathological section analysis of endocervical adenocarcinoma mucus (HE, ×200). (J) All peptide length profiles. (K) The distribution of unique peptide number of identified proteins. (L) Pie chart of protein identification coverage distribution.
Figure 2Distribution and stratification of differential proteins.
(A) Distribution of differential proteins between two groups. (B) Protein abundance distribution map. The figure shows the distribution of the differential multiples of all quantifiable proteins, where the x-coordinate represents the value of the differential multiples after logarithmic transformation in base 2. The part greater than 0 indicates the up-regulated expression, while the part less than 0 indicates the down-regulated expression. (C) Hierarchical clustering heat map of differential protein layers. Rows represent protein clustering and the column represents the sample pair clustering situation. As the protein ratio changes from small to large, the heat map color shows a corresponding green-black-red change.
Quantitative information on the top 10 proteins with significant differences among different components.
| Accession | Gene | Protein.names | ||
|---|---|---|---|---|
| Up-regulated | ||||
| EA:Ctrl | APOB | Apolipoprotein | 0.0402 | |
| FINC | Fibronectin | 0.0069 | ||
| K1C13 | Keratin, type I cytoskeletal 13 | 0.001 | ||
| SPTA1 | Spectrin alpha chain, erythrocytic 1 | 0.0003 | ||
| CATA | Catalase | 0.0034 | ||
| K2C4 | Keratin, type II cytoskeletal 4 | 0.0006 | ||
| PERM | Myeloperoxidase | 0.0007 | ||
| SPTB1 | Spectrin beta chain, erythrocytic | 0.0024 | ||
| PLSL | Plastin-2 | 0.0082 | ||
| PIGR | Polymeric immunoglobulin receptor | 0.0003 | ||
| AIS:EA | PP2AA | Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform | 0.000000115 | |
| HBG2 | Hemoglobin subunit gamma-2 | 0.00000523 | ||
| SBP1 | Methanethiol oxidase | 0.0001 | ||
| APOC3 | Apolipoprotein C-III | 0.0001 | ||
| INVO | Involucrin | 0.0003 | ||
| ANGT | Angiotensinogen | 0.0004 | ||
| TBB4B | Tubulin beta-4B chain | 0.0005 | ||
| LDHB | L-lactate dehydrogenase B chain | 0.0006 | ||
| AL1A1 | Retinal dehydrogenase 1 | 0.0008 | ||
| APOA1 | Apolipoprotein A–I | 0.0009 | ||
| AIS:Ctrl | F10A5 | Putative protein FAM10A5 | 0.0000000278 | |
| SKP1 | S-phase kinase-associated protein 1 | 0.000000389 | ||
| HBG2 | Hemoglobin subunit gamma-2 | 0.0001 | ||
| PNCB | Nicotinate phosphoribosyltransferase | 0.0001 | ||
| CAH2 | Carbonic anhydrase 2 | 0.0002 | ||
| CAH1 | Carbonic anhydrase 1 | 0.0005 | ||
| PON1 | Serum paraoxonase/arylesterase 1 | 0.0005 | ||
| SPTA1 | Spectrin alpha chain, erythrocytic 1 | 0.0006 | ||
| BLVRB | Flavin reductase (NADPH) | 0.0006 | ||
| CATA | Catalase | 0.0006 | ||
| Down-regulated | ||||
| EA:Ctrl | CO4B | Complement C4-B | 0.0064 | |
| A1AT | Alpha-1-antitrypsin | 0.0000254 | ||
| CFAH | Complement factor H | 0.0014 | ||
| A2ML1 | Alpha-2-macroglobulin-like protein 1 | 0.0025 | ||
| APOA1 | Apolipoprotein A–I | 0.0027 | ||
| HPT | Haptoglobin | 0.0078 | ||
| FIBB | Fibrinogen beta chain | 0.0108 | ||
| AHNK | Neuroblast differentiation-associated protein AHNAK | 0.0002 | ||
| LPC1 | Calpactin II | 0.0003 | ||
| FIBA | Fibrinogen alpha chain | 0.0034 | ||
| AIS:EA | IGA2 | Immunoglobulin alpha-2 heavy chain | 0.0000343 | |
| HSP27 | Heat Shock 27 kDa Protein 1 | 0.0000452 | ||
| PERM | Myeloperoxidase | 0.0001 | ||
| FINC | Fibronectin | 0.0001 | ||
| K2C5 | Keratin, type II cytoskeletal 5 | 0.0002 | ||
| MRP14 | Migration inhibitory factor-related protein 14 | 0.0003 | ||
| CALR | Calreticulin | 0.0003 | ||
| S100P | Protein S100-P | 0.0004 | ||
| PROF1 | Profilin-1 | 0.0007 | ||
| GLNA | Glutamine synthetase | 0.0007 | ||
| AIS:Ctrl | KPYM | Pyruvate kinase PKM | 0.0000178 | |
| SPR1A | Cornifin-A | 0.0001 | ||
| MRS | Myeloid-Related Sequence | 0.0002 | ||
| PERM | Myeloperoxidase | 0.0003 | ||
| A2GL | Leucine-rich alpha-2-glycoprotein | 0.0003 | ||
| CO9 | Complement component C9 | 0.0004 | ||
| S10A7 | Protein S100-A7 | 0.0005 | ||
| Sep-53 | Squamous epithelial heat shock protein 53 | 0.0006 | ||
| NGAL | Neutrophil gelatinase-associated lipocalin | 0.0006 | ||
| AK1BA | Aldo-keto reductase family 1 member B10 | 0.0007 | ||
Figure 3Functional annotation of differential proteins.
(A) Different function annotation result statistics graph. The x-coordinate represents identification or different annotation methods, and the y-coordinate represents the number of proteins corresponding to the x-coordinate. Classification of 1,056 differently expressed proteins in three groups of cervical mucus samples according to (B) biological process, (C) cellular component and (D) molecular function by GO analysis. Statistical chart of functional annotation results of different proteins GO.
Figure 4GO function annotation statistics results of differential proteins.
The yellow column shows that (A) EA/Ctrl (B) AIS/EA (C) AIS/Ctrl upregulation of the functional classification proportion of differential proteins under three standard bodies. The green column is the functional classification proportion under the three ontologies of down-regulated differential proteins.