| Literature DB >> 33192152 |
Florencia Grattarola1, Andrés González2, Patricia Mai3, Laura Cappuccio3, César Fagúndez-Pachón4, Florencia Rossi3, Franco Teixeira de Mello3, Lucía Urtado3, Daniel Pincheira-Donoso5.
Abstract
BACKGROUND: South America hosts some of the world's most prominent biodiversity hotspots. Yet, Uruguay - a country where multiple major ecosystems converge - ranks amongst the countries with the lowest levels of available digital biodiversity data in the continent. Such prevalent data scarcity has significantly undermined our ability to progress towards evidence-based conservation actions - a critical limitation for a country with a strong focus on agricultural industries and only 1.3% of the land surface guarded by protected areas. Under today's rapid biodiversity loss and environmental changes, the need for open-access biodiversity data is more pressing than ever before. To address this national issue, Biodiversidata - Uruguay's first Consortium of Biodiversity Data - has recently emerged with the aim of assembling a constantly growing database for the biodiversity of this country. While the first phase of the project targeted vertebrate biodiversity, the second phase presented in this paper spans the biodiversity of plants. NEW INFORMATION: As part of the second phase of the Biodiversidata initiative, we present the first comprehensive open-access species-level database of the vascular plant diversity recorded in Uruguay to date (i.e. all species for which data are currently available and species presence has been confirmed). It contains 12,470 occurrence records from across 1,648 species and 160 families, which roughly represents 60% of the total recorded flora of Uruguay. The primary biodiversity data include extant native and introduced species from the lycophytes, ferns, gymnosperms and angiosperms groups. Records were collated from multiple sources, including data available in peer-reviewed scientific literature, institutional scientific collections and datasets contributed by members of the Biodiversidata initiative. The complete database can be accessed at the Zenodo repository: doi.org/10.5281/zenodo.3954406. Florencia Grattarola, Andrés González, Patricia Mai, Laura Cappuccio, César Fagúndez-Pachón, Florencia Rossi, Franco Teixeira de Mello, Lucía Urtado, Daniel Pincheira-Donoso.Entities:
Keywords: Tracheophyta ; Río de la Plata grasslands; South America; Species occurrence records; Uruguay; biodiversity data gaps; data mobilisation
Year: 2020 PMID: 33192152 PMCID: PMC7606476 DOI: 10.3897/BDJ.8.e56850
Source DB: PubMed Journal: Biodivers Data J ISSN: 1314-2828
Records collected per group showing number of occurrence records, number of species, records with date of collection, records collected in the last 30 years and records with coordinates, with percentage in parentheses.
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| Lycophytes | 13 | 6 | 13 (100) | 11 (84.6) | 13 (100) |
| Ferns | 540 | 78 | 540 (100) | 508 (94.1) | 540 (100) |
| Gymnosperms | 48 | 5 | 41 (85.4) | 39 (81.2) | 48 (100) |
| Angiosperms | 11,869 | 1,559 | 10,527 (88.7) | 9,585 (80.8) | 11,869 (100) |
| Total | 12,470 | 1,648 | 11,121 (89.2) | 10,143 (81.3) | 12,470 (100) |
List of sources used to build the Biodiversidata plant dataset, including the source type, the plant groups included in each source and the number of records extracted from each of the sources.
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| Journal Article | Ferns, Gymnosperms, Angiosperms | 252 |
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| Journal Article | Ferns, Gymnosperms, Angiosperms | 107 |
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| Journal Article | Angiosperms | 3 |
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| Thesis | Gymnosperms, Angiosperms | 34 |
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| Short Communication | Angiosperms | 2 |
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| Short Communication | Angiosperms | 2 |
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| Short Communication | Angiosperms | 3 |
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| Journal Article | Angiosperms | 8 |
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| Journal Article | Angiosperms | 6 |
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| Journal Article | Ferns, Angiosperms | 153 |
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| Journal Article | Angiosperms | 26 |
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| Thesis | Angiosperms | 71 |
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| Biodiversidata member | Lycophytes, Ferns, Gymnosperms, Angiosperms | 340 |
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| Journal Article | Angiosperms | 52 |
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| Online Database | Lycophytes, Ferns, Gymnosperms, Angiosperms | 3428 |
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| Biodiversidata member | Angiosperms | 101 |
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| Thesis | Angiosperms | 781 |
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| Thesis | Angiosperms | 991 |
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| Thesis | Gymnosperms, Angiosperms | 1343 |
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| Journal Article | Gymnosperms, Angiosperms | 897 |
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| Journal Article | Angiosperms | 17 |
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| Journal Article | Angiosperms | 14 |
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| Thesis | Angiosperms | 68 |
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| Thesis | Angiosperms | 20 |
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| Thesis | Lycophytes, Ferns, Angiosperms | 220 |
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| Biodiversidata member | Ferns, Angiosperms | 520 |
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| Journal Article | Angiosperms | 50 |
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| Thesis | Angiosperms | 9 |
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| Thesis | Angiosperms | 152 |
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| Report | Lycophytes, Ferns, Gymnosperms, Angiosperms | 1357 |
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| Journal Article | Angiosperms | 2 |
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| Journal Article | Ferns, Angiosperms | 53 |
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| Journal Article | Lycophytes, Ferns, Gymnosperms, Angiosperms | 283 |
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| Report | Lycophytes, Ferns, Gymnosperms, Angiosperms | 710 |
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| Journal Article | Angiosperms | 20 |
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| Thesis | Angiosperms | 9 |
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| Biodiversidata member | Angiosperms, Ferns | 366 |
Figure 1.Distribution in Uruguay of (a) the total 12,470 occurrence records of vascular plants in Biodiversidata, (b) sampling effort with 25 × 25 km grid-cell resolution (the mid-size resolution used for Biodiversidata's analyses) and (c) urban areas (orange dots with size relative to surface in km2), routes (international, primary and secondary) and main rivers. Projection WGS1984.
Figure 2.Number of occurrence records of vascular plants from Uruguay per family within each clade, in Biodiversidata. For Ferns and Angiosperms, only families with more than 20 and 50 records, respectively, are shown. On top of the bars, the number of species for each family is included along with the corresponding number of species that is expected by Andrade et al. (2018) between brackets.
Figure 3.Representation of vascular plants families from Uruguay over time, grouped by clades, in Biodiversidata. Dots indicate there is at least one occurrence record for a species in the given family. For Ferns and Angiosperms, only families with more than 20 and 50 records, respectively, are shown.
| Rank | Scientific Name | Common Name |
|---|---|---|
| kingdom |
| Plants |
| phylum |
| Vascular Plants |
| Column label | Column description |
|---|---|
| occurrenceID | An identifier for the existence of a particular organism at a particular place at a particular time | dwc:occurrenceID |
| otherCatalogNumbers | A list (concatenated and separated) of previous or alternate fully qualified catalogue numbers or other human-used identifiers for the same particular organism, whether in the current or any other dataset or collection | dwc:otherCatalogNumbers |
| basisOfRecord | The specific nature of the data record (e.g. PreservedSpecimen, HumanObservation, unknown) | dwc:basisOfRecord |
| recordedBy | A list (concatenated and separated) of names of people, groups or organisations responsible for recording the original existence of a particular organism at a particular place at a particular time | dwc:recordedBy |
| establishmentMeans | The process by which the biological individual(s) represented in the record established at the spatial region or named place (e.g. native (= nativa), introduced (= introducida), unknown (= desconocido)) | dwc:establishmentMeans |
| previousIdentifications | A list (concatenated and separated) of previous assignments of names to the recorded organism | dwc:previousIdentifications |
| eventDate | The date during which the recording event occurred (format YYYY-MM-DD) | dwc:eventDate |
| year | The four-digit year in which the recording event occurred, according to the Common Era Calendar | dwc:year |
| month | The ordinal month in which the recording event occurred | dwc:month |
| day | The integer day of the month on which the recording event occurred | dwc:day |
| higherGeography | A list (concatenated and separated) of geographic names less specific than the information captured in the locality term | dwc:higherGeography |
| continent | The name of the continent in which the spatial region or named place occurs | dwc:continent |
| country | The name of the country or major administrative unit in which the spatial region or named place occurs | dwc:country |
| countryCode | The standard code for the country in which the spatial region or named place occurs | dwc:countryCode |
| stateProvince | The name of the next smaller administrative region than country (state, province, canton, department, region etc.) in which the location occurs | dwc:stateProvince |
| locality | The standardised description of the spatial region or named place of an event | dwc:locality |
| decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a spatial region or named place | dwc:decimalLatitude |
| decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a spatial region or named place | dwc:decimalLongitude |
| geodeticDatum | The ellipsoid, geodetic datum, or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude as based | dwc:geodeticDatum |
| coordinateUncertaintyInMeters | The horizontal distance (in metres) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the spatial region or named place | dwc:coordinateUncertaintyInMeters |
| coordinatePrecision | A decimal representation of the precision of the coordinates given in the decimalLatitude and decimalLongitude | dwc:coordinatePrecision |
| georeferencedBy | A list (concatenated and separated) of names of people, groups or organisations who determined the georeference (spatial representation) for the spatial region or named place | dwc:georeferencedBy |
| identifiedBy | A list (concatenated and separated) of names of people, groups or organisations who assigned the taxon to the subject | dwc:identifiedBy |
| taxonID | An global unique identifier for the set of taxon information | dwc:taxonID |
| scientificName | The full scientific name, with authorship and date information if known | dwc:scientificName |
| nameAccordingTo | The reference to the source in which the specific taxon concept circumscription is defined or implied | dwc:nameAccordingTo |
| higherClassification | A list (concatenated and separated) of taxa names terminating at the rank immediately superior to the taxon referenced in the taxon record | dwc:higherClassification |
| kingdom | The full scientific name of the kingdom in which the taxon is classified | dwc:kingdom |
| phylum | The full scientific name of the phylum or division in which the taxon is classified | dwc:phylum |
| class | The full scientific name of the class in which the taxon is classified | dwc:class |
| order | The full scientific name of the order in which the taxon is classified | dwc:order |
| family | The full scientific name of the family in which the taxon is classified | dwc:family |
| genus | The full scientific name of the genus in which the taxon is classified | dwc:genus |
| specificEpithet | The name of the first or species epithet of the scientificName | dwc:specificEpithet |
| infraspecificEpithet | The name of the lowest or terminal infraspecific epithet of the scientificName, excluding any rank designation | dwc:infraspecificEpithet |
| taxonRank | The taxonomic rank of the most specific name in the scientificName | dwc:taxonRank |
| scientificNameAuthorship | The authorship information for the scientificName | dwc:scientificNameAuthorship |
| institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record | dwc:institutionCode |
| collectionCode | The name, acronym, coden or initialism identifying the collection or dataset from which the record was derived | dwc:collectionCode |
| catalogNumber | An identifier (preferably unique) for the record within the dataset or collection | dwc:catalogNumber |
| recordNumber | An identifier given to the occurrence at the time it was recorded | dwc:recordNumber |
| associatedReferences | A list (concatenated and separated) of identifiers (publication, bibliographic reference, URI) of literature associated with the existence of a particular organism at a particular place at a particular time | dwc:associatedReferences |
| verbatimLocality | The original textual description of the spatial region or named place of the record event | dwc:verbatimLocality |
| georeferenceRemarks | Notes or comments about the spatial description determination, explaining assumptions made | dwc:georeferenceRemarks |
| vernacularName | A list (concatenated and separated) of common or vernacular names | dwc:vernacularName |
| locationAccordingTo | Information about the source of the location information | dwc:locationAccordingTo |
| georeferencedDate | The date on which the location was georeferenced | dwc:georeferencedDate |
| georeferenceSources | A list (concatenated and separated) of maps, gazetteers or other resources used to georeference the Location, described specifically enough to allow anyone in the future to use the same resources | dwc:georeferenceSources |
| georeferenceVerificationStatus | A categorical description of the extent to which the georeference has been verified to represent the best possible spatial description (e.g. requires verification) | dwc:georeferenceVerificationStatus |
| georeferenceProtocol | A description or reference to the methods used to determine the spatial coordinates and uncertainties | dwc:georeferenceProtocol |
| verbatimLatitude | The verbatim original latitude of the location (spatial region or named place) | dwc:verbatimLatitude |
| verbatimLongitude | The verbatim original longitude of the location (spatial region or named place) | dwc:verbatimLongitude |
| verbatimCoordinateSystem | The spatial coordinate system for the verbatimLatitude and verbatimLongitude of the location | dwc:verbatimCoordinateSystem |
| locationRemarks | Comments or notes about the location (spatial region or named place) | dwc:locationRemarks |
| measurementType | The nature of the measurement, fact, characteristic or assertion | dwc:measurementType |
| measurementValue | The value of the measurement, fact, characteristic or assertion | dwc:measurementValue |
| measurementDeterminedBy | A list (concatenated and separated) of names of people, groups or organisations who determined the value of the measurement, fact, characteristic or assertion | dwc:measurementDeterminedBy |
| measurementRemarks | Comments or notes accompanying the measurement, fact, characteristic or assertion | dwc:measurementRemarks |
| organismRemarks | Comments or notes about the particular organism recorded | dwc:organismRemarks |
| language | Language of the resource | dcterms:language |
| license | A legal document giving official permission to do something with the resource | dcterms:license |