Literature DB >> 33185845

Ultra-Fast Computation of Excited-States Spectra for Large Systems: Ultraviolet and Fluorescence Spectra of Proteins.

Yonggang Liu1,2, Jianjie Xu3, Li Han4, Qiangqiang Liu5, Yunfan Yang6, Zeren Li7, Zhongyuan Lu8, Hang Zhang7, Tengxiao Guo3, Qiao Liu7.   

Abstract

A workable approach named xTB-sTDDFT was selected to investigate the excited-state spectra of oxytocin (135 atoms), GHRP-6 (120 atoms) and insulin (793 atoms). Three different Hartree-Fock components functionals (wB97XD3: 51%, LC-BLYP: 53%, wB97X: 57%) were used to calculate the excitation spectra, and the results calculated by wB97XD3 functional well agree with the experiments. It's a deep impression that computed time cost reduced by more than 80%. For polypeptide (oxytocin and GHRP-6), both UV and fluorescence spectra were obtained, and the errors between the calculated and experimental values approximately were 20 nm. For Insulin, the errors are within 15 nm. UV spectrum peak is λcal = 262 nm (λexp = 277 nm, Δλ = 15 nm), and fluorescence spectrum peak is λcal = 294 nm (λexp = 304 nm, Δλ = 10 nm). In summary, a suitable theoretical model is established to ultra-fast calculate the electronic excitation spectra of large systems, such as proteins and biomacromolecules, with good calculation accuracy, fast calculation speed and low cost.

Entities:  

Keywords:  Excitation spectra; Excited state; sTDDF; xTB

Year:  2020        PMID: 33185845     DOI: 10.1007/s12539-020-00402-7

Source DB:  PubMed          Journal:  Interdiscip Sci        ISSN: 1867-1462            Impact factor:   2.233


  1 in total

1.  Revealing the Relationship between Electric Fields and the Conformation of Oxytocin Using Quasi-Static Amide-I Two-Dimensional Infrared Spectra.

Authors:  Hai-Chao Ren; Lin-Xiang Ji; Tu-Nan Chen; Yong-Gang Liu; Rui-Peng Liu; Dong-Qing Wei; Xian-Zhen Jia; Guang-Fu Ji
Journal:  ACS Omega       Date:  2022-01-19
  1 in total

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