Literature DB >> 33180788

Unifying the mechanism of mitotic exit control in a spatiotemporal logical model.

Rowan S M Howell1,2, Cinzia Klemm3, Peter H Thorpe3, Attila Csikász-Nagy2,4.   

Abstract

The transition from mitosis into the first gap phase of the cell cycle in budding yeast is controlled by the Mitotic Exit Network (MEN). The network interprets spatiotemporal cues about the progression of mitosis and ensures that release of Cdc14 phosphatase occurs only after completion of key mitotic events. The MEN has been studied intensively; however, a unified understanding of how localisation and protein activity function together as a system is lacking. In this paper, we present a compartmental, logical model of the MEN that is capable of representing spatial aspects of regulation in parallel to control of enzymatic activity. We show that our model is capable of correctly predicting the phenotype of the majority of mutants we tested, including mutants that cause proteins to mislocalise. We use a continuous time implementation of the model to demonstrate that Cdc14 Early Anaphase Release (FEAR) ensures robust timing of anaphase, and we verify our findings in living cells. Furthermore, we show that our model can represent measured cell-cell variation in Spindle Position Checkpoint (SPoC) mutants. This work suggests a general approach to incorporate spatial effects into logical models. We anticipate that the model itself will be an important resource to experimental researchers, providing a rigorous platform to test hypotheses about regulation of mitotic exit.

Entities:  

Year:  2020        PMID: 33180788      PMCID: PMC7685450          DOI: 10.1371/journal.pbio.3000917

Source DB:  PubMed          Journal:  PLoS Biol        ISSN: 1544-9173            Impact factor:   8.029


  95 in total

1.  The Bub2p spindle checkpoint links nuclear migration with mitotic exit.

Authors:  G Pereira; T Höfken; J Grindlay; C Manson; E Schiebel
Journal:  Mol Cell       Date:  2000-07       Impact factor: 17.970

2.  Modes of spindle pole body inheritance and segregation of the Bfa1p-Bub2p checkpoint protein complex.

Authors:  G Pereira; T U Tanaka; K Nasmyth; E Schiebel
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

3.  The role of the polo kinase Cdc5 in controlling Cdc14 localization.

Authors:  Rosella Visintin; Frank Stegmeier; Angelika Amon
Journal:  Mol Biol Cell       Date:  2003-08-07       Impact factor: 4.138

4.  MaBoSS 2.0: an environment for stochastic Boolean modeling.

Authors:  Gautier Stoll; Barthélémy Caron; Eric Viara; Aurélien Dugourd; Andrei Zinovyev; Aurélien Naldi; Guido Kroemer; Emmanuel Barillot; Laurence Calzone
Journal:  Bioinformatics       Date:  2017-07-15       Impact factor: 6.937

5.  Spatial regulation of Cdc55-PP2A by Zds1/Zds2 controls mitotic entry and mitotic exit in budding yeast.

Authors:  Valentina Rossio; Satoshi Yoshida
Journal:  J Cell Biol       Date:  2011-05-02       Impact factor: 10.539

6.  Tem1 localization to the spindle pole bodies is essential for mitotic exit and impairs spindle checkpoint function.

Authors:  Mauricio Valerio-Santiago; Fernando Monje-Casas
Journal:  J Cell Biol       Date:  2011-02-14       Impact factor: 10.539

7.  Budding yeast Bub2 is localized at spindle pole bodies and activates the mitotic checkpoint via a different pathway from Mad2.

Authors:  R Fraschini; E Formenti; G Lucchini; S Piatti
Journal:  J Cell Biol       Date:  1999-05-31       Impact factor: 10.539

8.  Asymmetry of the budding yeast Tem1 GTPase at spindle poles is required for spindle positioning but not for mitotic exit.

Authors:  Ilaria Scarfone; Marianna Venturetti; Manuel Hotz; Jette Lengefeld; Yves Barral; Simonetta Piatti
Journal:  PLoS Genet       Date:  2015-02-06       Impact factor: 5.917

9.  A comprehensive, mechanistically detailed, and executable model of the cell division cycle in Saccharomyces cerevisiae.

Authors:  Ulrike Münzner; Edda Klipp; Marcus Krantz
Journal:  Nat Commun       Date:  2019-03-21       Impact factor: 14.919

10.  Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress.

Authors:  Johnny M Tkach; Askar Yimit; Anna Y Lee; Michael Riffle; Michael Costanzo; Daniel Jaschob; Jason A Hendry; Jiongwen Ou; Jason Moffat; Charles Boone; Trisha N Davis; Corey Nislow; Grant W Brown
Journal:  Nat Cell Biol       Date:  2012-07-29       Impact factor: 28.824

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