Literature DB >> 33180322

The LEukemia Artificial Intelligence Program (LEAP) in chronic myeloid leukemia in chronic phase: A model to improve patient outcomes.

Koji Sasaki1,2, Elias J Jabbour1, Farhad Ravandi1, Marina Konopleva1, Gautam Borthakur1, William G Wierda1, Naval Daver1, Koichi Takahashi1, Kiran Naqvi1, Courtney DiNardo1, Guillermo Montalban-Bravo1, Rashmi Kanagal-Shamanna3, Ghayas Issa1, Preetesh Jain1, Jeffrey Skinner1, Mary B Rios1, Sherry Pierce1, Kelly A Soltysiak1, Junya Sato4, Guillermo Garcia-Manero1, Jorge E Cortes1,5.   

Abstract

Extreme gradient boosting methods outperform conventional machine-learning models. Here, we have developed the LEukemia Artificial intelligence Program (LEAP) with the extreme gradient boosting decision tree method for the optimal treatment recommendation of tyrosine kinase inhibitors (TKIs) in patients with chronic myeloid leukemia in chronic phase (CML-CP). A cohort of CML-CP patients was randomly divided into training/validation (N = 504) and test cohorts (N = 126). The training/validation cohort was used for 3-fold cross validation to develop the LEAP CML-CP model using 101 variables at diagnosis. The test cohort was then applied to the LEAP CML-CP model and an optimum TKI treatment was suggested for each patient. The area under the curve in the test cohort was 0.81899.Backward multivariate analysis identified age at diagnosis, the degree of comorbidities, and TKI recommended therapy by the LEAP CML-CP model as independent prognostic factors for overall survival. The bootstrapping method internally validated the association of the LEAP CML-CP recommendation with overall survival as an independent prognostic for overall survival. Selecting treatment according to the LEAP CML-CP personalized recommendations, in this model, is associated with better survival probability compared to treatment with a LEAP CML-CP non-recommended therapy. This approach may pave a way of new era of personalized treatment recommendations for patients with cancer.
© 2020 Wiley Periodicals LLC.

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Year:  2020        PMID: 33180322      PMCID: PMC9022629          DOI: 10.1002/ajh.26047

Source DB:  PubMed          Journal:  Am J Hematol        ISSN: 0361-8609            Impact factor:   13.265


  31 in total

1.  The achievement of an early complete cytogenetic response is a major determinant for outcome in patients with early chronic phase chronic myeloid leukemia treated with tyrosine kinase inhibitors.

Authors:  Elias Jabbour; Hagop Kantarjian; Susan O'Brien; Jenny Shan; Alfonso Quintas-Cardama; Stefan Faderl; Guillermo Garcia-Manero; Farhad Ravandi; Mary Beth Rios; Jorge Cortes
Journal:  Blood       Date:  2011-07-29       Impact factor: 22.113

2.  Incidence of second malignancies in patients with chronic myeloid leukemia in the era of tyrosine kinase inhibitors.

Authors:  Koji Sasaki; Hagop M Kantarjian; Susan O'Brien; Farhad Ravandi; Marina Konopleva; Gautam Borthakur; Guillermo Garcia-Manero; William G Wierda; Naval Daver; Alessandra Ferrajoli; Koichi Takahashi; Preetesh Jain; Mary Beth Rios; Sherry A Pierce; Elias J Jabbour; Jorge E Cortes
Journal:  Int J Hematol       Date:  2019-03-04       Impact factor: 2.490

3.  Multimorbidity, dementia and health care in older people:a population-based cohort study.

Authors:  Marcello Tonelli; Natasha Wiebe; Sharon Straus; Martin Fortin; Bruce Guthrie; Matthew T James; Scott W Klarenbach; Helen Tam-Tham; Richard Lewanczuk; Braden J Manns; Hude Quan; Paul E Ronksley; Peter Sargious; Brenda Hemmelgarn
Journal:  CMAJ Open       Date:  2017-08-14

4.  Machine learning algorithms outperform conventional regression models in predicting development of hepatocellular carcinoma.

Authors:  Amit G Singal; Ashin Mukherjee; B Joseph Elmunzer; Peter D R Higgins; Anna S Lok; Ji Zhu; Jorge A Marrero; Akbar K Waljee
Journal:  Am J Gastroenterol       Date:  2013-10-29       Impact factor: 10.864

5.  Final 5-Year Study Results of DASISION: The Dasatinib Versus Imatinib Study in Treatment-Naïve Chronic Myeloid Leukemia Patients Trial.

Authors:  Jorge E Cortes; Giuseppe Saglio; Hagop M Kantarjian; Michele Baccarani; Jiří Mayer; Concepción Boqué; Neil P Shah; Charles Chuah; Luis Casanova; Brigid Bradley-Garelik; George Manos; Andreas Hochhaus
Journal:  J Clin Oncol       Date:  2016-05-23       Impact factor: 44.544

6.  Long-term molecular and cytogenetic response and survival outcomes with imatinib 400 mg, imatinib 800 mg, dasatinib, and nilotinib in patients with chronic-phase chronic myeloid leukaemia: retrospective analysis of patient data from five clinical trials.

Authors:  Preetesh Jain; Hagop Kantarjian; Mona Lisa Alattar; Elias Jabbour; Koji Sasaki; Graciela Nogueras Gonzalez; Sara Dellasala; Sherry Pierce; Srdan Verstovsek; William Wierda; Gautam Borthakur; Farhad Ravandi; Susan O'Brien; Jorge Cortes
Journal:  Lancet Haematol       Date:  2015-03-20       Impact factor: 18.959

7.  Gradient boosting machines, a tutorial.

Authors:  Alexey Natekin; Alois Knoll
Journal:  Front Neurorobot       Date:  2013-12-04       Impact factor: 2.650

8.  Relative survival in patients with chronic-phase chronic myeloid leukaemia in the tyrosine-kinase inhibitor era: analysis of patient data from six prospective clinical trials.

Authors:  Koji Sasaki; Sara S Strom; Susan O'Brien; Elias Jabbour; Farhad Ravandi; Marina Konopleva; Gautam Borthakur; Naveen Pemmaraju; Naval Daver; Preetesh Jain; Sherry Pierce; Hagop Kantarjian; Jorge E Cortes
Journal:  Lancet Haematol       Date:  2015-04-20       Impact factor: 18.959

9.  Bosutinib Versus Imatinib for Newly Diagnosed Chronic Myeloid Leukemia: Results From the Randomized BFORE Trial.

Authors:  Jorge E Cortes; Carlo Gambacorti-Passerini; Michael W Deininger; Michael J Mauro; Charles Chuah; Dong-Wook Kim; Irina Dyagil; Nataliia Glushko; Dragana Milojkovic; Philipp le Coutre; Valentin Garcia-Gutierrez; Laurence Reilly; Allison Jeynes-Ellis; Eric Leip; Nathalie Bardy-Bouxin; Andreas Hochhaus; Tim H Brümmendorf
Journal:  J Clin Oncol       Date:  2017-11-01       Impact factor: 50.717

Review 10.  European LeukemiaNet recommendations for the management of chronic myeloid leukemia: 2013.

Authors:  Michele Baccarani; Michael W Deininger; Gianantonio Rosti; Andreas Hochhaus; Simona Soverini; Jane F Apperley; Francisco Cervantes; Richard E Clark; Jorge E Cortes; François Guilhot; Henrik Hjorth-Hansen; Timothy P Hughes; Hagop M Kantarjian; Dong-Wook Kim; Richard A Larson; Jeffrey H Lipton; François-Xavier Mahon; Giovanni Martinelli; Jiri Mayer; Martin C Müller; Dietger Niederwieser; Fabrizio Pane; Jerald P Radich; Philippe Rousselot; Giuseppe Saglio; Susanne Saußele; Charles Schiffer; Richard Silver; Bengt Simonsson; Juan-Luis Steegmann; John M Goldman; Rüdiger Hehlmann
Journal:  Blood       Date:  2013-06-26       Impact factor: 22.113

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  5 in total

Review 1.  Dose optimization of tyrosine kinase inhibitor therapy in chronic myeloid leukemia.

Authors:  Yoshihiro Umezawa; Koji Sasaki
Journal:  Int J Hematol       Date:  2022-09-10       Impact factor: 2.319

2.  Chronic Lymphocytic Leukemia Progression Diagnosis with Intrinsic Cellular Patterns via Unsupervised Clustering.

Authors:  Pingjun Chen; Siba El Hussein; Fuyong Xing; Muhammad Aminu; Aparajith Kannapiran; John D Hazle; L Jeffrey Medeiros; Ignacio I Wistuba; David Jaffray; Joseph D Khoury; Jia Wu
Journal:  Cancers (Basel)       Date:  2022-05-13       Impact factor: 6.575

Review 3.  Chromosomal Instability in Chronic Myeloid Leukemia: Mechanistic Insights and Effects.

Authors:  Jayastu Senapati; Koji Sasaki
Journal:  Cancers (Basel)       Date:  2022-05-21       Impact factor: 6.575

Review 4.  A Review of Artificial Intelligence Applications in Hematology Management: Current Practices and Future Prospects.

Authors:  Yousra El Alaoui; Adel Elomri; Marwa Qaraqe; Regina Padmanabhan; Ruba Yasin Taha; Halima El Omri; Abdelfatteh El Omri; Omar Aboumarzouk
Journal:  J Med Internet Res       Date:  2022-07-12       Impact factor: 7.076

5.  Comparing machine learning algorithms to predict 5-year survival in patients with chronic myeloid leukemia.

Authors:  Mostafa Shanbehzadeh; Mohammad Reza Afrash; Nader Mirani; Hadi Kazemi-Arpanahi
Journal:  BMC Med Inform Decis Mak       Date:  2022-09-06       Impact factor: 3.298

  5 in total

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