Literature DB >> 33179751

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.

Samuel M D Seaver1, Filipe Liu1, Qizhi Zhang1, James Jeffryes1, José P Faria1, Janaka N Edirisinghe1, Michael Mundy2, Nicholas Chia2, Elad Noor3, Moritz E Beber4, Aaron A Best5, Matthew DeJongh6, Jeffrey A Kimbrel7, Patrik D'haeseleer7, Sean R McCorkle8, Jay R Bolton9, Erik Pearson9, Shane Canon9, Elisha M Wood-Charlson9, Robert W Cottingham10, Adam P Arkin9, Christopher S Henry1.   

Abstract

Year:  2020        PMID: 33179751     DOI: 10.1093/nar/gkaa1143

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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  3 in total

Review 1.  Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes.

Authors:  Patrick A Leggieri; Yiyi Liu; Madeline Hayes; Bryce Connors; Susanna Seppälä; Michelle A O'Malley; Ophelia S Venturelli
Journal:  Annu Rev Biomed Eng       Date:  2021-03-29       Impact factor: 9.590

2.  Metabolite Damage and Damage Control in a Minimal Genome.

Authors:  Drago Haas; Antje M Thamm; Jiayi Sun; Lili Huang; Lijie Sun; Guillaume A W Beaudoin; Kim S Wise; Claudia Lerma-Ortiz; Steven D Bruner; Marian Breuer; Zaida Luthey-Schulten; Jiusheng Lin; Mark A Wilson; Greg Brown; Alexander F Yakunin; Inna Kurilyak; Jacob Folz; Oliver Fiehn; John I Glass; Andrew D Hanson; Christopher S Henry; Valérie de Crécy-Lagard
Journal:  mBio       Date:  2022-07-11       Impact factor: 7.786

3.  Predictive evolution of metabolic phenotypes using model-designed environments.

Authors:  Paula Jouhten; Dimitrios Konstantinidis; Filipa Pereira; Sergej Andrejev; Kristina Grkovska; Sandra Castillo; Payam Ghiachi; Gemma Beltran; Eivind Almaas; Albert Mas; Jonas Warringer; Ramon Gonzalez; Pilar Morales; Kiran R Patil
Journal:  Mol Syst Biol       Date:  2022-10       Impact factor: 13.068

  3 in total

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