Literature DB >> 33177003

Solvent engineering studies on recombinase polymerase amplification.

Kenji Kojima1, Kevin Maafu Juma1, Shihomi Akagi1, Kaichi Hayashi1, Teisuke Takita1, Ciara K O'Sullivan2, Shinsuke Fujiwara3, Yukiko Nakura4, Itaru Yanagihara4, Kiyoshi Yasukawa5.   

Abstract

Recombinase polymerase amplification (RPA) is a technique that is used to specifically amplify a target nucleic acid sequence. Unlike the polymerase chain reaction (PCR), RPA is performed at a constant temperature between 37 and 42°C. Therefore, it can be potentially used for the onsite detection of various pathogens when combined with DNA extraction and amplicon detection techniques. In this study, we prepared recombinant recombinase and single-stranded DNA-binding protein from T4 phage and used them to examine the effects of reaction conditions and additives on the efficiency of RPA. The results revealed that the optimal pH was 7.5-8.0, optimal potassium acetate concentration was 40-80 mM, and optimal reaction temperature was 37-45°C although dimethyl sulfoxide at 5% v/v and formamide at 5% v/v inhibited the reaction. Our results suggest that RPA could be conducted using a wider range of optimal reaction conditions than those required for PCR and that RPA is highly suitable for point-of-care use.
Copyright © 2020 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Reaction condition; Recombinase; Recombinase polymerase amplification; Single strand DNA-binding protein; Solvent engineering

Year:  2020        PMID: 33177003     DOI: 10.1016/j.jbiosc.2020.10.001

Source DB:  PubMed          Journal:  J Biosci Bioeng        ISSN: 1347-4421            Impact factor:   2.894


  4 in total

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Authors:  Zefeng Mao; Ruipeng Chen; Xiaojuan Wang; Zixuan Zhou; Yuan Peng; Shuang Li; Dianpeng Han; Sen Li; Yu Wang; Tie Han; Jun Liang; Shuyue Ren; Zhixian Gao
Journal:  Trends Food Sci Technol       Date:  2022-03-01       Impact factor: 12.563

2.  Modified uvsY by N-terminal hexahistidine tag addition enhances efficiency of recombinase polymerase amplification to detect SARS-CoV-2 DNA.

Authors:  Kevin Maafu Juma; Teisuke Takita; Masaya Yamagata; Mika Ishitani; Kaichi Hayashi; Kenji Kojima; Koichiro Suzuki; Yuri Ando; Wakao Fukuda; Shinsuke Fujiwara; Yukiko Nakura; Itaru Yanagihara; Kiyoshi Yasukawa
Journal:  Mol Biol Rep       Date:  2022-01-31       Impact factor: 2.742

3.  Optimization of reaction condition of recombinase polymerase amplification to detect SARS-CoV-2 DNA and RNA using a statistical method.

Authors:  Kevin Maafu Juma; Teisuke Takita; Kenji Ito; Masaya Yamagata; Shihomi Akagi; Emi Arikawa; Kenji Kojima; Manish Biyani; Shinsuke Fujiwara; Yukiko Nakura; Itaru Yanagihara; Kiyoshi Yasukawa
Journal:  Biochem Biophys Res Commun       Date:  2021-06-10       Impact factor: 3.575

4.  Development of robust isothermal RNA amplification assay for lab-free testing of RNA viruses.

Authors:  Radhika Biyani; Kirti Sharma; Kenji Kojima; Madhu Biyani; Vishnu Sharma; Tarun Kumawat; Kevin Maafu Juma; Itaru Yanagihara; Shinsuke Fujiwara; Eiichi Kodama; Yuzuru Takamura; Masahiro Takagi; Kiyoshi Yasukawa; Manish Biyani
Journal:  Sci Rep       Date:  2021-08-06       Impact factor: 4.379

  4 in total

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