Literature DB >> 33175170

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.

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Abstract

The National Genomics Data Center (NGDC), part of the China National Center for Bioinformation (CNCB), provides a suite of database resources to support worldwide research activities in both academia and industry. With the explosive growth of multi-omics data, CNCB-NGDC is continually expanding, updating and enriching its core database resources through big data deposition, integration and translation. In the past year, considerable efforts have been devoted to 2019nCoVR, a newly established resource providing a global landscape of SARS-CoV-2 genomic sequences, variants, and haplotypes, as well as Aging Atlas, BrainBase, GTDB (Glycosyltransferases Database), LncExpDB, and TransCirc (Translation potential for circular RNAs). Meanwhile, a series of resources have been updated and improved, including BioProject, BioSample, GWH (Genome Warehouse), GVM (Genome Variation Map), GEN (Gene Expression Nebulas) as well as several biodiversity and plant resources. Particularly, BIG Search, a scalable, one-stop, cross-database search engine, has been significantly updated by providing easy access to a large number of internal and external biological resources from CNCB-NGDC, our partners, EBI and NCBI. All of these resources along with their services are publicly accessible at https://bigd.big.ac.cn.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 33175170     DOI: 10.1093/nar/gkaa1022

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  57 in total

1.  HIRA complex presets transcriptional potential through coordinating depositions of the histone variants H3.3 and H2A.Z on the poised genes in mESCs.

Authors:  Yang Yang; Liwei Zhang; Chaoyang Xiong; Jun Chen; Li Wang; Zengqi Wen; Juan Yu; Ping Chen; Yanhui Xu; Jingji Jin; Yong Cai; Guohong Li
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

2.  Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.

Authors: 
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

3.  Mutual upregulation of HY5 and TZP in mediating phytochrome A signaling.

Authors:  Cong Li; Lijuan Qi; Shaoman Zhang; Xiaojing Dong; Yanjun Jing; Jinkui Cheng; Ziyi Feng; Jing Peng; Hong Li; Yangyang Zhou; Xiaoji Wang; Run Han; Jie Duan; William Terzaghi; Rongcheng Lin; Jigang Li
Journal:  Plant Cell       Date:  2022-01-20       Impact factor: 11.277

4.  Multiple lines of evidence supports the two varieties of Halenia elliptica (Gentianaceae) as two species.

Authors:  Jin-Feng Wu; Dong-Rui Jia; Rui-Juan Liu; Zhi-Li Zhou; Lin-Lin Wang; Min-Yu Chen; Li-Hua Meng; Yuan-Wen Duan
Journal:  Plant Divers       Date:  2021-09-23

5.  Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes.

Authors:  Xiaoxuan Zheng; Martin T Jahn; Mingming Sun; Ville-Petri Friman; Jose Luis Balcazar; Jinfeng Wang; Yu Shi; Xin Gong; Feng Hu; Yong-Guan Zhu
Journal:  ISME J       Date:  2022-01-17       Impact factor: 11.217

6.  A Peptide Derived from GAPDH Enhances Resistance to DNA Damage in Saccharomyces cerevisiae Cells.

Authors:  Xi Zhao; Xianqiang Lian; Yan Liu; Liyan Zhou; Bian Wu; Yu V Fu
Journal:  Appl Environ Microbiol       Date:  2021-12-22       Impact factor: 5.005

7.  Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2.

Authors:  Dalang Yu; Xiao Yang; Bixia Tang; Yi-Hsuan Pan; Jianing Yang; Guangya Duan; Junwei Zhu; Zi-Qian Hao; Hailong Mu; Long Dai; Wangjie Hu; Mochen Zhang; Ying Cui; Tong Jin; Cui-Ping Li; Lina Ma; Xiao Su; Guoqing Zhang; Wenming Zhao; Haipeng Li
Journal:  Brief Bioinform       Date:  2022-03-10       Impact factor: 11.622

8.  The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.

Authors:  Daniel J Rigden; Xosé M Fernández
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

Review 9.  PCAT6 may be a new prognostic biomarker in various cancers: a meta-analysis and bioinformatics analysis.

Authors:  Song-Bo Shi; Qing-Hao Cheng; Shi-Yi Gong; Ting-Ting Lu; Shi-Fang Guo; Shao-Ming Song; Yu-Ping Yang; Qi Cui; Ke-Hu Yang; Yao-Wen Qian
Journal:  Cancer Cell Int       Date:  2021-07-12       Impact factor: 5.722

10.  Unraveling the Regulatory Mechanism of Color Diversity in Camellia japonica Petals by Integrative Transcriptome and Metabolome Analysis.

Authors:  Mingyue Fu; Xu Yang; Jiarui Zheng; Ling Wang; Xiaoyan Yang; Yi Tu; Jiabao Ye; Weiwei Zhang; Yongling Liao; Shuiyuan Cheng; Feng Xu
Journal:  Front Plant Sci       Date:  2021-06-11       Impact factor: 5.753

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