Literature DB >> 33174597

GlycoPOST realizes FAIR principles for glycomics mass spectrometry data.

Yu Watanabe1, Kiyoko F Aoki-Kinoshita2, Yasushi Ishihama3,4, Shujiro Okuda1.   

Abstract

For the reproducibility and sustainability of scientific research, FAIRness (Findable, Accessible, Interoperable and Re-usable), with respect to the release of raw data obtained by researchers, is one of the most important principles underpinning the future of open science. In genomics and transcriptomics, the sharing of raw data from next-generation sequencers is made possible through public repositories. In addition, in proteomics, the deposition of raw data from mass spectrometry (MS) experiments into repositories is becoming standardized. However, a standard repository for such MS data had not yet been established in glycomics. With the increasing number of glycomics MS data, therefore, we have developed GlycoPOST (https://glycopost.glycosmos.org/), a repository for raw MS data generated from glycomics experiments. In just the first year since the release of GlycoPOST, 73 projects have already been registered by researchers around the world, and the number of registered projects is continuously growing, making a significant contribution to the future FAIRness of the glycomics field. GlycoPOST is a free resource to the community and accepts (and will continue to accept in the future) raw data regardless of vendor-specific formats.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 33174597     DOI: 10.1093/nar/gkaa1012

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

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Journal:  Nat Chem Biol       Date:  2022-06-06       Impact factor: 16.174

3.  Serum Linkage-Specific Sialylation Changes Are Potential Biomarkers for Monitoring and Predicting the Recurrence of Papillary Thyroid Cancer Following Thyroidectomy.

Authors:  Zhen Cao; Zejian Zhang; Rui Liu; Mengwei Wu; Zepeng Li; Xiequn Xu; Ziwen Liu
Journal:  Front Endocrinol (Lausanne)       Date:  2022-04-29       Impact factor: 6.055

4.  The schizophrenia-associated variant in SLC39A8 alters protein glycosylation in the mouse brain.

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Journal:  Mol Psychiatry       Date:  2022-03-08       Impact factor: 13.437

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Authors:  Daniel J Rigden; Xosé M Fernández
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

10.  A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface.

Authors:  Han Wu; Asif Shajahan; Jeong-Yeh Yang; Emanuela Capota; Amberlyn M Wands; Connie M Arthur; Sean R Stowell; Kelley W Moremen; Parastoo Azadi; Jennifer J Kohler
Journal:  Cell Chem Biol       Date:  2021-07-30       Impact factor: 9.039

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