| Literature DB >> 33173509 |
Wenqiang Li1,2, Xi Su1,2, Tengfei Chen1,2, Zhen Li1,2, Yongfeng Yang1,2, Luwen Zhang1,2, Qing Liu1,2, Minglong Shao1,2, Yan Zhang1,2, Minli Ding1, Yanli Lu1, Hongyan Yu1, Xiaoduo Fan3, Meng Song1,2, Luxian Lv1,2.
Abstract
OBJECTIVE: Schizophrenia (SZ) is a common and complex psychiatric disorder that has a significant genetic component. The glutamate hypothesis describes one possible pathogenesis of SZ. The solute carrier family 1 gene (SLC1A1) is one of several genes thought to play a critical role in regulating the glutamatergic system and is strongly implicated in the pathophysiology of SZ. In this study, we identify polymorphisms of the SLC1A1 gene that may confer susceptibility to SZ in the Han Chinese population.Entities:
Keywords: SLC1A1; association; psychopathology symptoms; schizophrenia; single-nucleotide polymorphisms
Year: 2020 PMID: 33173509 PMCID: PMC7538510 DOI: 10.3389/fpsyt.2020.559210
Source DB: PubMed Journal: Front Psychiatry ISSN: 1664-0640 Impact factor: 4.157
Demographics of the schizophrenia patients and healthy controls.
| Variables | SZ | HC |
|
|---|---|---|---|
| N | 528 | 528 | |
| Age (years) | 27.32 ± 8.03 | 27.73 ± 8.01 | 0.95 |
| Age of Onset (years) | 23.47 ± 8.26 | NA | |
| Duration of Illness (years) | 6.18 ± 5.91 | NA | |
| Gender (male/female) | 1.00 | ||
| Male | 264 | 264 | |
| Female | 264 | 264 | |
| Family history | |||
| Yes | 82 | 0 | |
| No | 446 | 528 |
Genotype and allele frequencies of 36 SNPs in the SLC1A1 gene in SZ patients and healthy controls.
| SNP# | dbSNP ID | Allele(D/d) | SZ | HCs | P value | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| N | HWE (p) | Genotype | Allele | MAF | N | HWE (p) | Genotype | Allele | MAF | Genotype | Allele | |||||||||
| DD | Dd | dd | D | d | DD | Dd | dd | D | D | |||||||||||
| 1 | rs10815017 | G/A | 528 | 0.021 | 391 | 119 | 18 | 901 | 155 | 0.147 | 528 | 0.111 | 348 | 168 | 12 | 864 | 192 | 0.182 |
|
|
| 2 | rs2026828 | A/G | 528 | 0.240 | 204 | 238 | 86 | 646 | 410 | 0.388 | 528 | 0.716 | 163 | 257 | 108 | 583 | 473 | 0.448 |
|
|
| 3 | rs6476875 | A/G | 528 | 0.001 | 353 | 143 | 32 | 849 | 207 | 0.196 | 526 | 0.906 | 316 | 184 | 26 | 816 | 236 | 0.224 |
| 0.111 |
| 4 | rs7024664 | T/A | 527 | 0.000 | 258 | 174 | 95 | 690 | 364 | 0.345 | 523 | 0.000 | 283 | 132 | 108 | 698 | 348 | 0.333 |
| 0.540 |
| 5 | rs7021569 | C/G | 528 | 0.877 | 309 | 189 | 30 | 807 | 249 | 0.236 | 526 | 0.003 | 295 | 180 | 51 | 770 | 282 | 0.268 | 0.050 | 0.088 |
| 6 | rs4742007 | A/G | 528 | 0.041 | 131 | 287 | 110 | 549 | 507 | 0.480 | 527 | 0.240 | 139 | 250 | 138 | 528 | 526 | 0.499 | 0.051 | 0.384 |
| 7 | rs3780412 | A/G | 528 | 0.832 | 323 | 181 | 24 | 827 | 229 | 0.217 | 527 | 0.665 | 292 | 198 | 37 | 782 | 272 | 0.258 | 0.078 |
|
| 8 | rs10974573 | A/C | 528 | 0.364 | 338 | 173 | 17 | 849 | 207 | 0.196 | 528 | 0.748 | 369 | 146 | 13 | 884 | 172 | 0.163 | 0.124 |
|
| 9 | rs7860087 | G/C | 528 | 0.555 | 387 | 132 | 9 | 906 | 150 | 0.142 | 528 | 0.375 | 416 | 103 | 9 | 935 | 121 | 0.115 | 0.099 | 0.059 |
| 10 | rs2039291 | C/A | 528 | 0.529 | 174 | 252 | 102 | 600 | 456 | 0.432 | 528 | 0.994 | 148 | 263 | 117 | 559 | 497 | 0.471 | 0.186 | 0.073 |
| 11 | rs2228622 | G/A | 528 | 0.858 | 320 | 183 | 25 | 823 | 233 | 0.221 | 528 | 0.605 | 297 | 195 | 36 | 789 | 267 | 0.253 | 0.200 | 0.082 |
| 12 | rs10739062 | G/C | 528 | 0.359 | 246 | 222 | 60 | 714 | 342 | 0.324 | 528 | 0.799 | 219 | 240 | 69 | 678 | 378 | 0.358 | 0.235 | 0.098 |
| 13 | rs10974619 | G/A | 528 | 0.522 | 464 | 61 | 3 | 989 | 67 | 0.063 | 528 | 0.353 | 448 | 75 | 5 | 971 | 85 | 0.080 | 0.329 | 0.130 |
| 14 | rs12682807 | A/C | 527 | 0.805 | 292 | 202 | 33 | 786 | 268 | 0.254 | 528 | 0.857 | 316 | 184 | 28 | 816 | 240 | 0.227 | 0.334 | 0.147 |
| 15 | rs2072657 | A/C | 526 | 0.107 | 254 | 234 | 38 | 742 | 310 | 0.295 | 527 | 0.613 | 285 | 202 | 40 | 772 | 282 | 0.268 | 0.124 | 0.166 |
| 16 | rs16921385 | A/G | 528 | 0.177 | 377 | 143 | 8 | 897 | 159 | 0.151 | 528 | 0.413 | 366 | 144 | 18 | 876 | 180 | 0.170 | 0.134 | 0.213 |
| 17 | rs10491731 | A/C | 528 | 0.687 | 309 | 192 | 27 | 810 | 246 | 0.233 | 528 | 0.087 | 300 | 186 | 42 | 786 | 270 | 0.256 | 0.175 | 0.224 |
| 18 | rs3780413 | G/C | 528 | 0.089 | 276 | 222 | 30 | 774 | 282 | 0.267 | 528 | 0.558 | 304 | 190 | 34 | 798 | 258 | 0.244 | 0.130 | 0.231 |
| 19 | rs188537 | C/A | 528 | 0.628 | 396 | 124 | 8 | 916 | 140 | 0.133 | 528 | 0.194 | 410 | 114 | 4 | 934 | 122 | 0.116 | 0.368 | 0.235 |
| 20 | rs10814995 | A/C | 528 | 0.369 | 265 | 212 | 51 | 742 | 314 | 0.297 | 528 | 0.676 | 242 | 234 | 52 | 718 | 338 | 0.320 | 0.343 | 0.258 |
| 21 | rs3087879 | G/C | 528 | 0.219 | 422 | 97 | 9 | 941 | 115 | 0.109 | 526 | 0.697 | 405 | 112 | 9 | 922 | 130 | 0.124 | 0.491 | 0.293 |
| 22 | rs301432 | A/T | 528 | 0.540 | 327 | 174 | 27 | 828 | 228 | 0.216 | 527 | 0.427 | 308 | 194 | 25 | 810 | 244 | 0.231 | 0.421 | 0.390 |
| 23 | rs12378107 | G/C | 506 | 0.776 | 396 | 104 | 6 | 896 | 116 | 0.115 | 499 | 0.101 | 385 | 102 | 12 | 872 | 126 | 0.126 | 0.345 | 0.423 |
| 24 | rs3780411 | G/C | 528 | 0.077 | 131 | 284 | 113 | 546 | 510 | 0.483 | 527 | 0.632 | 135 | 258 | 134 | 528 | 526 | 0.499 | 0.213 | 0.460 |
| 25 | rs10814991 | A/G | 528 | 0.201 | 152 | 276 | 100 | 580 | 476 | 0.451 | 527 | 0.292 | 162 | 271 | 94 | 595 | 459 | 0.435 | 0.760 | 0.480 |
| 26 | rs7021409 | G/A | 528 | 0.661 | 267 | 214 | 47 | 748 | 308 | 0.292 | 527 | 0.643 | 274 | 209 | 44 | 757 | 297 | 0.282 | 0.884 | 0.616 |
| 27 | rs7032326 | A/G | 528 | 0.138 | 213 | 232 | 83 | 658 | 398 | 0.377 | 528 | 0.893 | 212 | 244 | 72 | 668 | 388 | 0.367 | 0.581 | 0.653 |
| 28 | rs1471786 | G/A | 528 | 0.820 | 152 | 265 | 111 | 569 | 487 | 0.461 | 527 | 0.807 | 156 | 264 | 107 | 576 | 478 | 0.454 | 0.939 | 0.724 |
| 29 | rs301430 | G/A | 528 | 0.211 | 213 | 255 | 60 | 681 | 375 | 0.355 | 528 | 0.584 | 218 | 238 | 72 | 674 | 382 | 0.362 | 0.420 | 0.751 |
| 30 | rs6476879 | C/A | 528 | 0.284 | 212 | 254 | 62 | 678 | 378 | 0.358 | 527 | 0.312 | 216 | 251 | 60 | 683 | 371 | 0.352 | 0.957 | 0.775 |
| 31 | rs10758624 | G/A | 528 | 0.247 | 347 | 167 | 14 | 861 | 195 | 0.185 | 528 | 0.086 | 353 | 150 | 25 | 856 | 200 | 0.189 | 0.131 | 0.780 |
| 32 | rs10758632 | C/G | 528 | 0.437 | 197 | 244 | 87 | 638 | 418 | 0.396 | 527 | 0.267 | 195 | 241 | 91 | 631 | 423 | 0.401 | 0.943 | 0.797 |
| 33 | rs3780415 | A/G | 528 | 0.671 | 373 | 140 | 15 | 886 | 170 | 0.161 | 527 | 0.527 | 376 | 136 | 15 | 888 | 166 | 0.157 | 0.966 | 0.827 |
| 34 | rs7045401 | A/C | 528 | 0.277 | 196 | 261 | 71 | 653 | 403 | 0.382 | 528 | 0.889 | 203 | 250 | 75 | 656 | 400 | 0.379 | 0.791 | 0.893 |
| 35 | rs301431 | C/G | 528 | 0.678 | 284 | 209 | 35 | 777 | 279 | 0.264 | 527 | 0.380 | 281 | 213 | 33 | 775 | 279 | 0.265 | 0.946 | 0.979 |
| 36 | rs972519 | G/C | 528 | 0.547 | 452 | 72 | 4 | 976 | 80 | 0.076 | 528 | 0.547 | 452 | 72 | 4 | 976 | 80 | 0.076 | 1.000 | 1.000 |
SZ, schizophrenia; HCs, healthy controls.
Major and minor alleles are denoted by D and d, respectively.
Number of samples with successful genotype.
*p value of Bonferroni correction.
The bold value indicates a value less than 0.05.
Figure 1Haplotype block structure of the SLC1A1 gene in both SZ patients and HCs. The index association SNP is represented by a diamond. The colors of the remaining SNPs (circles) indicate LD with the index SNP based on pairwise r2 values from our data.
Associated haplotype frequencies of 36 SNPs in the SLC1A1 gene between SZ and healthy controls.
| Block | Haplotype | Frequencies | SZ Frequencies | HC Frequencies | Chi Square | P Value |
|---|---|---|---|---|---|---|
| 1 | GA | 0.544 | 0.545 | 0.543 | 0.017 | 0.896 |
| GC | 0.380 | 0.379 | 0.382 | 0.018 | 0.893 | |
| CA | 0.076 | 0.076 | 0.076 | 0.001 | 1.000 | |
| 2 | GGG | 0.523 | 0.525 | 0.521 | 0.029 | 0.864 |
| GGA | 0.187 | 0.189 | 0.184 | 0.099 | 0.753 | |
| AGG | 0.163 | 0.171 | 0.154 | 1.217 | 0.270 | |
| ACG | 0.123 | 0.110 | 0.137 | 3.443 | 0.064 | |
| 3 | AA | 0.534 | 0.512 | 0.556 | 3.974 |
|
| CA | 0.306 | 0.317 | 0.294 | 1.361 | 0.243 | |
| AG | 0.157 | 0.168 | 0.147 | 1.681 | 0.195 | |
| 4 | CA | 0.541 | 0.512 | 0.571 | 7.433 |
|
| GA | 0.249 | 0.264 | 0.233 | 2.688 | 0.101 | |
| CG | 0.207 | 0.220 | 0.193 | 2.326 | 0.127 | |
| 5 | AAG | 0.576 | 0.545 | 0.606 | 7.940 | 0.005 |
| CGG | 0.240 | 0.251 | 0.229 | 1.405 | 0.236 | |
| AGA | 0.162 | 0.180 | 0.145 | 4.699 |
| |
| AGG | 0.016 | 0.017 | 0.014 | 0.276 | 0.600 | |
| 6 | GA | 0.509 | 0.500 | 0.517 | 0.580 | 0.447 |
| CA | 0.254 | 0.241 | 0.266 | 1.708 | 0.191 | |
| GG | 0.236 | 0.255 | 0.216 | 4.526 |
| |
| 7 | AC | 0.457 | 0.453 | 0.461 | 0.134 | 0.714 |
| GC | 0.278 | 0.282 | 0.275 | 0.147 | 0.702 | |
| GG | 0.264 | 0.265 | 0.264 | 0.001 | 0.981 | |
| 8 | CG | 0.525 | 0.522 | 0.529 | 0.108 | 0.743 |
| AG | 0.354 | 0.352 | 0.357 | 0.050 | 0.823 | |
| CC | 0.120 | 0.126 | 0.115 | 0.692 | 0.406 | |
| 9 | CAGG | 0.502 | 0.495 | 0.510 | 0.477 | 0.490 |
| CAGG | 0.502 | 0.495 | 0.510 | 0.477 | 0.490 | |
| CTCG | 0.217 | 0.227 | 0.207 | 1.185 | 0.276 | |
| AACG | 0.121 | 0.112 | 0.130 | 1.509 | 0.219 | |
| CACC | 0.112 | 0.120 | 0.104 | 1.241 | 0.265 | |
| CACG | 0.038 | 0.038 | 0.037 | 0.003 | 0.959 |
Block 1: rs972519- rs7045401; Block 2: rs7021409-rs7860087-rs10758624; Block 3: rs10814995-rs16921385;
Block 4: rs7021569-rs6476875; Block 5: rs10491731-rs2026828-rs1081507; Block 6: rs3780413-rs3780412;
Block 7: rs1471786-rs301431; Block 8: rs6476879-rs12378107; Block 9: rs188537-rs301432-rs3780411-rs3087879.
The bold value indicates a value less than 0.05.
Association analyses between SNPs and sub-scores of PANSS in SZ patients.
| SNP | Genotype | N | PANSS Total | Positive Symptoms | Negative Symptoms | General Psychopathology | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| Mean | SD | Mean | SD | Mean | SD | Mean | SD | |||
| rs7032326 | AA | 98 | 92.86 | 23.57* | 26.17 | 6.46* | 22.20 | 8.33* | 44.48 | 13.34* |
| AG | 107 | 83.62 | 18.88 | 23.93 | 5.80 | 19.86 | 6.94 | 39.82 | 11.40 | |
| GG | 32 | 97.50 | 23.35 | 26.50 | 7.18 | 23.09 | 7.24 | 47.91 | 12.94 | |
| rs7860087 | GG | 188 | 87.74 | 20.15* | 24.86 | 5.87 | 20.69 | 7.07* | 42.20 | 11.96* |
| CG | 46 | 96.93 | 28.01 | 26.76 | 8.06 | 23.74 | 9.54 | 46.43 | 15.00 | |
| CC | 3 | 70.67 | 5.86 | 23.33 | 3.79 | 19.33 | 5.51 | 28.00 | 5.29 | |
| rs2039291 | AA | 49 | 90.82 | 22.71 | 26.71 | 6.47* | 20.04 | 7.51 | 44.06 | 13.33 |
| AC | 119 | 88.27 | 20.48 | 23.95 | 5.84 | 21.45 | 7.54 | 42.87 | 11.97 | |
| CC | 69 | 90.04 | 24.53 | 26.30 | 6.78 | 21.83 | 8.00 | 41.91 | 13.67 | |
| rs4742007 | AA | 69 | 86.28 | 21.11 | 23.75 | 6.35* | 21.20 | 7.72 | 41.32 | 11.71 |
| AG | 107 | 92.40 | 23.25 | 26.19 | 6.49 | 21.85 | 7.64 | 44.36 | 13.60 | |
| GG | 61 | 87.33 | 20.78 | 25.13 | 5.89 | 20.31 | 7.67 | 41.89 | 12.17 | |
| rs301430 | AA | 28 | 84.82 | 15.29 | 26.25 | 5.69 | 18.36 | 6.91* | 40.21 | 7.98 |
| AG | 106 | 92.20 | 24.02 | 25.33 | 6.66 | 22.52 | 7.76 | 44.35 | 14.09 | |
| GG | 103 | 87.56 | 21.42 | 24.80 | 6.22 | 20.77 | 7.55 | 42.00 | 12.21 | |
*p < 0.05, compared with other genotypes; LSD tests, Bonferroni.