Literature DB >> 3317280

Transcription of the tRNA-tufB operon of Escherichia coli: activation, termination and antitermination.

J H van Delft1, B Mariñon, D S Schmidt, L Bosch.   

Abstract

Signals setting the level of transcription of the tRNA-tufB operon have been studied by deletion mapping. TufB transcription was measured in vivo with plasmid-borne tRNA-tufB:galk operon fusions. Removal of the sequences from -133 to -58 with respect to the transcription start point, results in a 90% decrease of tufB transcription. This demonstrates the presence of a region, upstream of the tRNA-tufB promoter, that enhances the expression of the operon. DNA fragments bearing this upstream activator region do not display an abnormal electrophoretic mobility, as has been observed for the rrnB P1 upstream activator. Deletions starting in the first tRNA gene and directing towards tufB reveal at least two sites that influence tufB transcription. One signals transcription termination in the intergenic region between thrT and tufB. The other may be involved in antitermination. Possible mechanisms underlying antitermination and termination are considered in the light of the nucleotide sequence.

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Year:  1987        PMID: 3317280      PMCID: PMC306485          DOI: 10.1093/nar/15.22.9515

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  41 in total

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Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

2.  Complete nucleotide sequence of the Escherichia coli plasmid pBR322.

Authors:  J G Sutcliffe
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1979

3.  Construction and characterization of the two hybrid Co1E1 plasmids carrying Escherichia coli tufB gene.

Authors:  A Miyajima; M Shibuya; Y Kaziro
Journal:  FEBS Lett       Date:  1979-06-15       Impact factor: 4.124

4.  Three loci in Escherichia coli K-12 that control the excision of pyrimidine dimers and certain other mutagen products from DNA.

Authors:  P Howard-Flanders; R P Boyce; L Theriot
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Review 5.  Transcription termination and the regulation of gene expression.

Authors:  T Platt
Journal:  Annu Rev Biochem       Date:  1986       Impact factor: 23.643

6.  Location of the tufB promoter of E. coli: cotranscription of tufB with four transfer RNA genes.

Authors:  J S Lee; G An; J D Friesen; N P Fill
Journal:  Cell       Date:  1981-07       Impact factor: 41.582

7.  Definition of a novel promoter for the major adenovirus-associated virus mRNA.

Authors:  M R Green; R G Roeder
Journal:  Cell       Date:  1980-11       Impact factor: 41.582

8.  The leftward promoter of bacteriophage lambda. Structure, biological activity, and influence by adjacent regions.

Authors:  G T Horn; R D Wells
Journal:  J Biol Chem       Date:  1981-02-25       Impact factor: 5.157

9.  The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli.

Authors:  G An; J D Friesen
Journal:  Gene       Date:  1980-12       Impact factor: 3.688

10.  A relationship between DNA helix stability and recognition sites for RNA polymerase.

Authors:  H J Vollenweider; M Fiandt; W Szybalski
Journal:  Science       Date:  1979-08-03       Impact factor: 47.728

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  10 in total

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Authors:  P Saxena; J R Walker
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2.  Prediction of RNA secondary structure, including pseudoknotting, by computer simulation.

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3.  FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions.

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Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

Review 4.  Linkage map of Escherichia coli K-12, edition 10: the traditional map.

Authors:  M K Berlyn
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

5.  FIS activates sequential steps during transcription initiation at a stable RNA promoter.

Authors:  G Muskhelishvili; M Buckle; H Heumann; R Kahmann; A A Travers
Journal:  EMBO J       Date:  1997-06-16       Impact factor: 11.598

6.  The elongation factor EF-Tu from E. coli binds to the upstream activator region of the tRNA-tufB operon.

Authors:  E Vijgenboom; L Nilsson; L Bosch
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

7.  E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo.

Authors:  W Ross; J F Thompson; J T Newlands; R L Gourse
Journal:  EMBO J       Date:  1990-11       Impact factor: 11.598

8.  The role of FIS in trans activation of stable RNA operons of E. coli.

Authors:  L Nilsson; A Vanet; E Vijgenboom; L Bosch
Journal:  EMBO J       Date:  1990-03       Impact factor: 11.598

9.  FIS and RNA polymerase holoenzyme form a specific nucleoprotein complex at a stable RNA promoter.

Authors:  G Muskhelishvili; A A Travers; H Heumann; R Kahmann
Journal:  EMBO J       Date:  1995-04-03       Impact factor: 11.598

10.  The Escherichia coli FIS protein is not required for the activation of tyrT transcription on entry into exponential growth.

Authors:  L R Lazarus; A A Travers
Journal:  EMBO J       Date:  1993-06       Impact factor: 11.598

  10 in total

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