Literature DB >> 33168272

In silico analysis of the antimicrobial activity of phytochemicals: towards a technological breakthrough.

Salvatore Rampone1, Caterina Pagliarulo2, Chiara Marena3, Antonello Orsillo3, Margherita Iannaccone3, Carmela Trionfo3, Daniela Sateriale2, Marina Paolucci2.   

Abstract

BACKGROUND: The complications associated with infections from pathogens increasingly resistant to traditional drugs lead to a constant increase in the mortality rate among those affected. In such cases the fundamental purpose of the microbiology laboratory is to determine the sensitivity profile of pathogens to antimicrobial agents. This is an intense and complex work often not facilitated by the test's characteristics. Despite the evolution of the Antimicrobial Susceptibility Testing (AST) technologies, the technological breakthrough that could guide and facilitate the search for new antimicrobial agents is still missing.
METHODS: In this work, we propose the experimental use of in silico instruments, particularly feedforward Multi-Layer Perceptron (MLP) Artificial Neural Network, and Genetic Programming (GP), to verify, but also to predict, the effectiveness of natural and experimental mixtures of polyphenols against several microbial strains.
RESULTS: We value the results in predicting the antimicrobial sensitivity profile from the mixture data. Trained MLP shows very high correlations coefficients (0,93 and 0,97) and mean absolute errors (110,70 and 56,60) in determining the Minimum Inhibitory Concentration and Minimum Microbicidal Concentration, respectively, while GP not only evidences very high correlation coefficients (0,89 and 0,96) and low mean absolute errors (6,99 and 5,60) in the same tasks, but also gives an explicit representation of the acquired knowledge about the polyphenol mixtures.
CONCLUSIONS: In silico tools can help to predict phytobiotics antimicrobial efficacy, providing an useful strategy to innovate and speed up the extant classic microbiological techniques.
Copyright © 2020. Published by Elsevier B.V.

Entities:  

Keywords:  Antimicrobial susceptibility; Artificial neural networks; Genetic programming; In silico analysis; Phytobiotics

Mesh:

Substances:

Year:  2020        PMID: 33168272     DOI: 10.1016/j.cmpb.2020.105820

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  3 in total

1.  Profiling of Antifungal Activities and In Silico Studies of Natural Polyphenols from Some Plants.

Authors:  Beenish Khanzada; Nosheen Akhtar; Mohammad K Okla; Saud A Alamri; Abdulrahman Al-Hashimi; Muhammad Waleed Baig; Samina Rubnawaz; Hamada AbdElgawad; Abdurahman H Hirad; Ihsan-Ul Haq; Bushra Mirza
Journal:  Molecules       Date:  2021-11-26       Impact factor: 4.411

2.  In Silico and In Vitro Screening Constituents of Eclipta alba Leaf Extract to Reveal Antimicrobial Potential.

Authors:  Rahul Kumar Sharma; Shabana Bibi; Hitesh Chopra; Muhammad Saad Khan; Navidha Aggarwal; Inderbir Singh; Syed Umair Ahmad; Mohammad Mehedi Hasan; Mahmoud Moustafa; Mohammed Al-Shehri; Abdulaziz Alshehri; Atul Kabra
Journal:  Evid Based Complement Alternat Med       Date:  2022-08-17       Impact factor: 2.650

3.  Chestnut Shell Tannins: Effects on Intestinal Inflammation and Dysbiosis in Zebrafish.

Authors:  Graziella Orso; Mikhail M Solovyev; Serena Facchiano; Evgeniia Tyrikova; Daniela Sateriale; Elena Kashinskaya; Caterina Pagliarulo; Hossein S Hoseinifar; Evgeniy Simonov; Ettore Varricchio; Marina Paolucci; Roberta Imperatore
Journal:  Animals (Basel)       Date:  2021-05-25       Impact factor: 2.752

  3 in total

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