| Literature DB >> 33168088 |
Vasantha H S Kumar1, Huamei Wang2, Lori Nielsen2.
Abstract
BACKGROUND: Hyperoxia at resuscitation increases oxidative stress, and even brief exposure to high oxygen concentrations during stabilization may trigger organ injury with adverse long-term outcomes in premature infants. We studied the long-term effects of short-term perinatal oxygen exposure on cell cycle gene expression and lung growth in adult mice.Entities:
Keywords: Cell cycle; Gene expression; Lung; Oxygen; Resuscitation
Year: 2020 PMID: 33168088 PMCID: PMC7654066 DOI: 10.1186/s40659-020-00318-y
Source DB: PubMed Journal: Biol Res ISSN: 0716-9760 Impact factor: 5.612
Cell cycle gene expression by real-time PCR array in lung homogenate of mice at 4- and 12-weeks of age exposed to 30 min of 40%O2 within 6 h of birth
| Gene symbol | Gene description | Fold change in gene expression |
|---|---|---|
| Over | ||
| Cdk4 | Cyclin-dependent kinase 4 | 4.26 (0.01–16.5) |
| Dst | Dystonin | 4.34 (0.01–15.4) |
| Msh2 | MutS homolog 2 ( | 2.64 (0.01–9.35) |
| Psmg2 | Proteasome assembly chaperone 2 | 3.28 (0.01–10.3) |
| Rbl1 | Retinoblastoma-like protein 1 | 2.56 (0.01–7.06) |
| Shc1 | Src homology 2 transforming protein C1 | 2.21 (0.01–5.09) |
| Trp63 | Transformation related protein p63 | 2.37 (0.01–5.67) |
| Under-Expressed Genes | ||
| Ccnb1 | Cyclin B1 | 0.36 (0.01–1.04) |
| Ccnb2 | Cyclin B2 | 0.50 (0.19–0.82) |
| Gpr132 | G protein-coupled receptor 132 | 0.15 (0.01–0.76) |
| Mcm3 | Minichromosome maintenance complex-3 | 0.17 (0.01–0.70) |
| Over-expressed genes | ||
| Ccnb1 | Cyclin B1 | 5.9 (0.01–10.75) |
| Trp63 | Transformation related protein p63 | 4.16 (0.01–11.59) |
| Under-expressed genes | ||
| Abl1 | Non-receptor tyrosine protein kinase | 0.28 (0.01–0.67) |
Genes were considered over-expressed (Fold Change ≥ 2.0) or under-expressed (Fold Change ≤ 0.5) relative to the control group (21%O2). The fold change (FC) in gene expression in 21%O2 group = 1.0; values expressed as FC with 95% confidence intervals
Housekeeping genes: Gapdh (Glyceraldehyde-3-phosphate dehydrogenase), Hprt (Hypoxanthine guanine phosphoribosyl transferase) & Actb (Actin, beta); N = six mice / group, each time-point
Cell cycle gene expression by real-time PCR array in lung homogenate of mice at 4- and 12-weeks of age exposed to 30 min of 100%O2 within 6 h of birth
| Gene symbol | Gene description | Fold change in gene expression |
|---|---|---|
| Over-expressed genes | ||
| Cdk4 | Cyclin-dependent kinase 4 | 4.07 (0.01–15.8) |
| Dst | Dystonin | 3.45 (0.001–12.3) |
| Mre11a | Meiotic recombination 11 homolog A | 2.06 (0.001–4.38) |
| Mdm2 | mouse 3T3 cell double minute 2 | 2.01 (0.54–3.49) |
| Msh2 | MutS homolog 2 (E. coli) | 2.91 (0.01–10.32) |
| Npm2 | Nucleoplasmin 2 | 2.31 (0.02–4.62) |
| Psmg2 | Proteasome assembly chaperone 2 | 3.28 (0.01–10.3) |
| Rbl1 | Retinoblastoma-like protein 1 | 2.70 (0.01–7.56) |
| Shc1 | Src homology 2 transforming protein C1 | 2.52 (0.01–5.85) |
| Slfn1 | Schlafen 1 | 2.01 (0.51–3.45) |
| Under-expressed genes | ||
| Ak1 | Adenylate kinase 1 | 0.34 (0.01–0.68) |
| Abl1 | Non-receptor tyrosine protein kinase | 0.31 (0.01–0.98) |
| Ccna2 | Cyclin A2 | 0.35 (0.14–0.57)* |
| Ccnb1 | Cyclin B1 | 0.08 (0.001–0.31) |
| Ccnb2 | Cyclin B2 | 0.38 (0.13–0.64)* |
| Cdkn1a | Cyclin-dependent kinase inhibitor 1A | 0.50 (0.31–0.69)* |
| Gpr132 | G protein-coupled receptor 132 | 0.32 (0.001–1.61) |
| Mcm3 | Minichromosome maintenance complex-3 | 0.17 (0.001–0.71) |
| Mki67 | Antigen identified by monoclonal antibody Ki-67 | 0.39 (0.21–0.58)* |
| Ppm1d | Protein Phosphatase 1D | 0.28 (0.001–0.97) |
| Ran | RAs-related nuclear protein | 0.13 (0.01–0.62) |
| Rbl2 | Retinoblastoma-like protein-2 | 0.22 (0.01–0.81) |
| Sfn | Stratifin | 0.38 (0.001–0.94) |
| Over-expressed genes | ||
| Atm | Ataxia Telangiectasia Mutated | 2.4 (0.01–7.38) |
| Ccnb1 | Cyclin B1 | 2.55 (0.001–6.75) |
| Ccnb2 | Cyclin B2 | 3.38 (0.001–11.3) |
| Ccnc | Cyclin C | 2.28 (0.01–7.15) |
| Trp63 | Transformation related protein p63 | 2.93 (0.01–8.79) |
| Under-expressed genes | ||
| Abl1 | Non-receptor tyrosine protein kinase | 0.33 (0.01–0.88) |
| Inha | Inhibin alpha | 0.52 (0.32–0.73)* |
| Skp2 | S-phase kinase-associated protein 2 (p45) | 0.62 (0.46–0.79)* |
Genes were considered over-expressed (Fold Change ≥ 2.0) or under-expressed (Fold Change ≤ 0.5) relative to the control group (21%O2). The fold change (FC) in gene expression in 21%O2 group = 1.0; values expressed as FC with 95% confidence intervals
Housekeeping genes: Gapdh (Glyceraldehyde-3-phosphate dehydrogenase), Hprt (Hypoxanthine guanine phosphoribosyl transferase) & Actb (Actin, beta); N = six mice / group, each time-point
*p < 0.01 vs control group
Fig. 1Principal Component Analysis (PCA). The Scree plot demonstrates the Eigenvalues of the principal components in the PCA analysis. The PCA presents one component with an eigenvalue of > 1, which explains 98.03% of the total variation in cell cycle gene expression at 4 weeks (a). Similarly, one component with an eigenvalue of > 1 illustrates 97.92% of the total variation in cell cycle gene expression at 12 weeks (b)
Principal component analysis (PCA) correlation matrix
| Component 1 | |
|---|---|
| Correlation in gene expression among groups (4-week old mice) | |
| 21%O2 Group | 0.981 |
| 40%O2 Group | 0.995 |
| 100%O2 Group | 0.994 |
| Correlation in gene expression among groups (12-week old mice) | |
| 21%O2 Group | 0.981 |
| 40%O2 Group | 0.997 |
| 100%O2 Group | 0.991 |
Cell cycle gene expression in whole lung homogenate in 4- and 12-week-old mice following short-term (30 min) of perinatal oxygen exposure soon after birth. The principal component analysis revealed one component with Eigenvalue > 1. The PCA component matrix demonstrates a high correlation between each variable in 4- and 12-week-old mice
Protein expression of selected cell cycle proteins and elastin in lung homogenates measured by enzyme immunoassay (EIA) in mice at 4 and 12 weeks
| Protein | 4 Weeks | 12 Weeks | ||||
|---|---|---|---|---|---|---|
| 21% O2 | 40% O2 | 100% O2 | 21% O2 | 40% O2 | 100% O2 | |
| CCNB1 | 27.32 ± 3.54 | 34.60 ± 6.29* | 29.08 ± 3.26 | 28.29 ± 3.54 | 21.59 ± 4.73 | 25.04 ± 4.65 |
| MKI67 | 17.05 ± 2.98 | 25.16 ± 1.4*† | 19.24 ± 2.38 | 26.63 ± 5.67 | 22.35 ± 4.15 | 25.51 ± 7.39 |
| CDKN1A (p21) | 12.60 ± 0.31 | 12.58 ± 0.28 | 12.25 ± 0.28 | 14.33 ± 3.68 | 12.89 ± 0.30 | 12.71 ± 0.08 |
| Trp63 | 2.46 ± 2.71 | 3.55 ± 2.51 | 0.66 ± 0.15 | 1.67 ± 0.13 | 1.48 ± 1.01 | 1.37 ± 0.66 |
| ELN | 1.14 ± 0.37 | 0.96 ± 0.22 | 0.48 ± 0.24* | 0.23 ± 0.20 | 0.57 ± 0.40 | 0.62 ± 0.42 |
The mice were exposed to 30 min of oxygen exposure (21%O2, 40%O2, or 100%O2) within six hours after birth
Values were expressed as mean ± SD (N = 6 in each group, each time point)
CCNB1 cyclin B1, Ki67 marker of proliferation Ki-67, CDKN1A (p21) cyclin-dependent kinase inhibitor 1A, Trp63 tumor protein 63, ELN elastin, Cell cycle proteins and elastin expressed as pg/µg lung protein
*p < 0.05 vs. 21%O2 group
†p < 0.05 vs. 100% O2 group (Fisher's Post-Hoc test, ANOVA)
Fig. 2Ki67 Immunostaining. Staining for Ki67, a marker of cellular proliferation was performed on lung sections at four weeks (a 21%O2, b 40%O2 & c 100%O2) and 12 weeks mice (d 21%O2, e 40%O2 & f 100%O2) following neonatal oxygen exposure (Scale bar: 60 µm). Ki67 positive cells for nuclear staining was calculated at 400 × resolution (56,000 µm2 area) in all the groups (g five sections/mice; 6 mice/group; 21%O2—grey bars; 40%O2—white bars; 100%O2—black bars). The number of Ki67 positive cells demonstrated a significant correlation over time but not with the oxygen groups (p < 0.001, Two-way ANOVA). On multiple comparisons, there was no significant difference among the oxygen groups
Fig. 3Lung histopathology. Lung sections were assessed by H&E staining in all the groups at four weeks (a 21%O2, b 40%O2 & c 100%O2) and 12 weeks of age (d 21%O2, e 40%O2 & f 100%O2) following neonatal oxygen exposure. Lungs did not demonstrate gross evidence of alveolar simplification (Scale bar: 100 µm). Radial alveolar count (RAC) (g) and mean linear intercept (MLI) (h) was estimated in all the groups (21%O2—grey bars; 40%O2—white bars; 100%O2—black bars; 400 × resolution). RAC was not significantly different in the groups at four weeks and 12 weeks in mice (g). However, MLI demonstrated a significant interaction concerning oxygen groups (p < 0.001; Two-way ANOVA). On multiple comparisons, exposure to 100%O2 soon after birth resulted in a significant increase in MLI at 4 and 12 weeks of age in mice (*p < 0.001 vs. 21%O2 & 40%O2 groups, Two-way ANOVA). (n = 6/group, each time-point)
Fig. 4Elastin Staining & Lung Morphology. Lungs were assessed by elastin staining in all groups at four weeks (a 21%O2, b 40%O2 & c 100%O2) and 12 weeks (d 21%O2, e 40%O2 & f 100%O2) of age following neonatal oxygen exposure (Scale bar: 100 µm). Alveolar number (g), alveolar surface area per high power field (HPF) (850 × 450 µm; 382,000 µm2) (h), septal length (i), and septal count (j) were assessed at 200 × resolution. There was no difference in alveolar number, alveolar surface area, and septal count among the three oxygen groups at both time points. Septal length demonstrated a significant interaction among the three oxygen groups over time (p < 0.01, Two-way ANOVA). On multiple comparisons, exposure to 100%O2 soon after birth resulted in a significant reduction in the length of the secondary septae at 12 weeks of age in adult mice (*p < 0.01 vs. 21%O2 & 40%O2 groups, Two-way ANOVA). (n = 6/group, each time-point)