Literature DB >> 33166390

COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics.

Dmitry Tworowski1, Alessandro Gorohovski1, Sumit Mukherjee1, Gon Carmi1, Eliad Levy1, Rajesh Detroja1, Sunanda Biswas Mukherjee1, Milana Frenkel-Morgenstern1.   

Abstract

The recent outbreak of COVID-19 has generated an enormous amount of Big Data. To date, the COVID-19 Open Research Dataset (CORD-19), lists ∼130,000 articles from the WHO COVID-19 database, PubMed Central, medRxiv, and bioRxiv, as collected by Semantic Scholar. According to LitCovid (11 August 2020), ∼40,300 COVID19-related articles are currently listed in PubMed. It has been shown in clinical settings that the analysis of past research results and the mining of available data can provide novel opportunities for the successful application of currently approved therapeutics and their combinations for the treatment of conditions caused by a novel SARS-CoV-2 infection. As such, effective responses to the pandemic require the development of efficient applications, methods and algorithms for data navigation, text-mining, clustering, classification, analysis, and reasoning. Thus, our COVID19 Drug Repository represents a modular platform for drug data navigation and analysis, with an emphasis on COVID-19-related information currently being reported. The COVID19 Drug Repository enables users to focus on different levels of complexity, starting from general information about (FDA-) approved drugs, PubMed references, clinical trials, recipes as well as the descriptions of molecular mechanisms of drugs' action. Our COVID19 drug repository provide a most updated world-wide collection of drugs that has been repurposed for COVID19 treatments around the world.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 33166390     DOI: 10.1093/nar/gkaa969

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  11 in total

1.  The 2021 Nucleic Acids Research database issue and the online molecular biology database collection.

Authors:  Daniel J Rigden; Xosé M Fernández
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

2.  Automated Extraction of Information From Texts of Scientific Publications: Insights Into HIV Treatment Strategies.

Authors:  Nadezhda Biziukova; Olga Tarasova; Sergey Ivanov; Vladimir Poroikov
Journal:  Front Genet       Date:  2020-12-22       Impact factor: 4.599

3.  Protective Role of a TMPRSS2 Variant on Severe COVID-19 Outcome in Young Males and Elderly Women.

Authors:  Maria Monticelli; Bruno Hay Mele; Elisa Benetti; Chiara Fallerini; Margherita Baldassarri; Simone Furini; Elisa Frullanti; Francesca Mari; Giuseppina Andreotti; Maria Vittoria Cubellis; Alessandra Renieri
Journal:  Genes (Basel)       Date:  2021-04-19       Impact factor: 4.096

4.  Clinical and Molecular Characterization of a Rare Case of BNT162b2 mRNA COVID-19 Vaccine-Associated Myositis.

Authors:  Eli Magen; Sumit Mukherjee; Mahua Bhattacharya; Rajesh Detroja; Eugene Merzon; Idan Blum; Alejandro Livoff; Mark Shlapobersky; Gideon Baum; Ran Talisman; Evgenia Cherniavsky; Amir Dori; Milana Frenkel-Morgenstern
Journal:  Vaccines (Basel)       Date:  2022-07-16

Review 5.  Current Therapeutics for COVID-19, What We Know about the Molecular Mechanism and Efficacy of Treatments for This Novel Virus.

Authors:  Divya Narayanan; Tanyalak Parimon
Journal:  Int J Mol Sci       Date:  2022-07-12       Impact factor: 6.208

Review 6.  COVID-19-Related Scientific Literature Exploration: Short Survey and Comparative Study.

Authors:  Bahaj Adil; Safae Lhazmir; Mounir Ghogho; Houda Benbrahim
Journal:  Biology (Basel)       Date:  2022-08-16

7.  mRNA-lncRNA Co-Expression Network Analysis Reveals the Role of lncRNAs in Immune Dysfunction during Severe SARS-CoV-2 Infection.

Authors:  Sumit Mukherjee; Bodhisattwa Banerjee; David Karasik; Milana Frenkel-Morgenstern
Journal:  Viruses       Date:  2021-03-03       Impact factor: 5.048

8.  COVID-19 Drug Repurposing: A Network-Based Framework for Exploring Biomedical Literature and Clinical Trials for Possible Treatments.

Authors:  Ahmed Abdeen Hamed; Tamer E Fandy; Karolina L Tkaczuk; Karin Verspoor; Byung Suk Lee
Journal:  Pharmaceutics       Date:  2022-03-04       Impact factor: 6.321

9.  Seasonal UV exposure and vitamin D: association with the dynamics of COVID-19 transmission in Europe.

Authors:  Sunanda Biswas Mukherjee; Alessandro Gorohovski; Eugene Merzon; Eliad Levy; Sumit Mukherjee; Milana Frenkel-Morgenstern
Journal:  FEBS Open Bio       Date:  2021-12-04       Impact factor: 2.792

Review 10.  Advances in the computational landscape for repurposed drugs against COVID-19.

Authors:  Illya Aronskyy; Yosef Masoudi-Sobhanzadeh; Antonio Cappuccio; Elena Zaslavsky
Journal:  Drug Discov Today       Date:  2021-07-30       Impact factor: 7.851

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