Literature DB >> 33165929

GC-content biases in protein-coding genes act as an "mRNA identity" feature for nuclear export.

Alexander F Palazzo1, Yoon Mo Kang1.   

Abstract

It has long been observed that human protein-coding genes have a particular distribution of GC-content: the 5' end of these genes has high GC-content while the 3' end has low GC-content. In 2012, it was proposed that this pattern of GC-content could act as an mRNA identity feature that would lead to it being better recognized by the cellular machinery to promote its nuclear export. In contrast, junk RNA, which largely lacks this feature, would be retained in the nucleus and targeted for decay. Now two recent papers have provided evidence that GC-content does promote the nuclear export of many mRNAs in human cells.
© 2020 Wiley Periodicals LLC.

Entities:  

Keywords:  NXF1; TREX; junk RNA; lncRNA; mRNA; mRNA nuclear export; nuclear pore complex; transcriptional noise

Year:  2020        PMID: 33165929     DOI: 10.1002/bies.202000197

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  3 in total

Review 1.  Non-Darwinian Molecular Biology.

Authors:  Alexander F Palazzo; Nevraj S Kejiou
Journal:  Front Genet       Date:  2022-02-16       Impact factor: 4.599

2.  Transgene-design: a web application for the design of mammalian transgenes.

Authors:  Stefanie Mühlhausen; Laurence D Hurst
Journal:  Bioinformatics       Date:  2022-03-04       Impact factor: 6.937

3.  Context-specific effects of sequence elements on subcellular localization of linear and circular RNAs.

Authors:  Maya Ron; Igor Ulitsky
Journal:  Nat Commun       Date:  2022-05-05       Impact factor: 17.694

  3 in total

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