Literature DB >> 33165028

Practitioner's Guide to Latent Class Analysis: Methodological Considerations and Common Pitfalls.

Pratik Sinha1,2, Carolyn S Calfee1,2, Kevin L Delucchi3.   

Abstract

Latent class analysis is a probabilistic modeling algorithm that allows clustering of data and statistical inference. There has been a recent upsurge in the application of latent class analysis in the fields of critical care, respiratory medicine, and beyond. In this review, we present a brief overview of the principles behind latent class analysis. Furthermore, in a stepwise manner, we outline the key processes necessary to perform latent class analysis including some of the challenges and pitfalls faced at each of these steps. The review provides a one-stop shop for investigators seeking to apply latent class analysis to their data.
Copyright © 2020 by the Society of Critical Care Medicine and Wolters Kluwer Health, Inc. All Rights Reserved.

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Year:  2021        PMID: 33165028      PMCID: PMC7746621          DOI: 10.1097/CCM.0000000000004710

Source DB:  PubMed          Journal:  Crit Care Med        ISSN: 0090-3493            Impact factor:   9.296


  40 in total

1.  The importance of external validity.

Authors:  Allan Steckler; Kenneth R McLeroy
Journal:  Am J Public Health       Date:  2007-11-29       Impact factor: 9.308

2.  A Monte Carlo investigation of factors influencing latent class analysis: an application to eating disorder research.

Authors:  Sonja A Swanson; Katajun Lindenberg; Stephanie Bauer; Ross D Crosby
Journal:  Int J Eat Disord       Date:  2011-08-31       Impact factor: 4.861

3.  Why have clinical trials in sepsis failed?

Authors:  John C Marshall
Journal:  Trends Mol Med       Date:  2014-02-24       Impact factor: 11.951

4.  A Distinct Low Lung Function Trajectory from Childhood to the Fourth Decade of Life.

Authors:  Cristine E Berry; Dean Billheimer; Isaac C Jenkins; Zhenqiang J Lu; Debra A Stern; Lynn B Gerald; Tara F Carr; Stefano Guerra; Wayne J Morgan; Anne L Wright; Fernando D Martinez
Journal:  Am J Respir Crit Care Med       Date:  2016-09-01       Impact factor: 21.405

5.  Identifying adult asthma phenotypes using a clustering approach.

Authors:  V Siroux; X Basagaña; A Boudier; I Pin; J Garcia-Aymerich; A Vesin; R Slama; D Jarvis; J M Anto; F Kauffmann; J Sunyer
Journal:  Eur Respir J       Date:  2011-01-13       Impact factor: 16.671

6.  Acute respiratory distress syndrome subphenotypes and differential response to simvastatin: secondary analysis of a randomised controlled trial.

Authors:  Carolyn S Calfee; Kevin L Delucchi; Pratik Sinha; Michael A Matthay; Jonathan Hackett; Manu Shankar-Hari; Cliona McDowell; John G Laffey; Cecilia M O'Kane; Daniel F McAuley
Journal:  Lancet Respir Med       Date:  2018-08-02       Impact factor: 30.700

7.  Clusters of comorbidities based on validated objective measurements and systemic inflammation in patients with chronic obstructive pulmonary disease.

Authors:  Lowie E G W Vanfleteren; Martijn A Spruit; Miriam Groenen; Swetlana Gaffron; Vanessa P M van Empel; Piet L B Bruijnzeel; Erica P A Rutten; Jos Op 't Roodt; Emiel F M Wouters; Frits M E Franssen
Journal:  Am J Respir Crit Care Med       Date:  2013-04-01       Impact factor: 21.405

8.  A data-driven approach to estimating the number of clusters in hierarchical clustering.

Authors:  Antoine E Zambelli
Journal:  F1000Res       Date:  2016-12-01

9.  Associations of wheezing phenotypes in the first 6 years of life with atopy, lung function and airway responsiveness in mid-childhood.

Authors:  J Henderson; R Granell; J Heron; A Sherriff; A Simpson; A Woodcock; D P Strachan; S O Shaheen; J A C Sterne
Journal:  Thorax       Date:  2008-08-04       Impact factor: 9.102

10.  Two subphenotypes of septic acute kidney injury are associated with different 90-day mortality and renal recovery.

Authors:  Renske Wiersema; Sakari Jukarainen; Suvi T Vaara; Meri Poukkanen; Päivi Lakkisto; Hector Wong; Adam Linder; Iwan C C van der Horst; Ville Pettilä
Journal:  Crit Care       Date:  2020-04-15       Impact factor: 9.097

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  15 in total

1.  Identification of phenotypes in paediatric patients with acute respiratory distress syndrome: a latent class analysis.

Authors:  Mary K Dahmer; Guangyu Yang; Min Zhang; Michael W Quasney; Anil Sapru; Heidi M Weeks; Pratik Sinha; Martha A Q Curley; Kevin L Delucchi; Carolyn S Calfee; Heidi Flori
Journal:  Lancet Respir Med       Date:  2021-12-06       Impact factor: 30.700

Review 2.  Endotypes and the Path to Precision in Moderate and Severe Traumatic Brain Injury.

Authors:  Tej D Azad; Pavan P Shah; Han B Kim; Robert D Stevens
Journal:  Neurocrit Care       Date:  2022-03-21       Impact factor: 3.532

3.  Identifying High-Risk Subphenotypes and Associated Harms From Delayed Antibiotic Orders and Delivery.

Authors:  Xuan Han; Alexandra Spicer; Kyle A Carey; Emily R Gilbert; Neda Laiteerapong; Nirav S Shah; Christopher Winslow; Majid Afshar; Markos G Kashiouris; Matthew M Churpek
Journal:  Crit Care Med       Date:  2021-10-01       Impact factor: 9.296

4.  Latent Class Analysis Reveals COVID-19-related Acute Respiratory Distress Syndrome Subgroups with Differential Responses to Corticosteroids.

Authors:  Pratik Sinha; David Furfaro; Matthew J Cummings; Darryl Abrams; Kevin Delucchi; Manoj V Maddali; June He; Alison Thompson; Michael Murn; John Fountain; Amanda Rosen; Shelief Y Robbins-Juarez; Matthew A Adan; Tejus Satish; Mahesh Madhavan; Aakriti Gupta; Alexander K Lyashchenko; Cara Agerstrand; Natalie H Yip; Kristin M Burkart; Jeremy R Beitler; Matthew R Baldwin; Carolyn S Calfee; Daniel Brodie; Max R O'Donnell
Journal:  Am J Respir Crit Care Med       Date:  2021-12-01       Impact factor: 21.405

5.  COVID-19-related ARDS: one disease, two trajectories, and several unanswered questions.

Authors:  Jean-Baptiste Lascarrou
Journal:  Lancet Respir Med       Date:  2021-10-13       Impact factor: 30.700

6.  Longitudinal respiratory subphenotypes in patients with COVID-19-related acute respiratory distress syndrome: results from three observational cohorts.

Authors:  Lieuwe D J Bos; Michael Sjoding; Pratik Sinha; Sivasubramanium V Bhavani; Patrick G Lyons; Alice F Bewley; Michela Botta; Anissa M Tsonas; Ary Serpa Neto; Marcus J Schultz; Robert P Dickson; Frederique Paulus
Journal:  Lancet Respir Med       Date:  2021-10-13       Impact factor: 30.700

7.  Characterizing preclinical sub-phenotypic models of acute respiratory distress syndrome: An experimental ovine study.

Authors:  Jonathan E Millar; Karin Wildi; Nicole Bartnikowski; Mahe Bouquet; Kieran Hyslop; Margaret R Passmore; Katrina K Ki; Louise E See Hoe; Nchafatso G Obonyo; Lucile Neyton; Sanne Pedersen; Sacha Rozencwajg; J Kenneth Baillie; Gianluigi Li Bassi; Jacky Y Suen; Daniel F McAuley; John F Fraser
Journal:  Physiol Rep       Date:  2021-10

8.  Ideal Cardiovascular Health in Young Adults With Established Cardiovascular Diseases.

Authors:  Jane A Leopold; Elliott M Antman
Journal:  Front Cardiovasc Med       Date:  2022-02-17

9.  Latent class analysis-derived subphenotypes are generalisable to observational cohorts of acute respiratory distress syndrome: a prospective study.

Authors:  Pratik Sinha; Kevin L Delucchi; Yue Chen; Hanjing Zhuo; Jason Abbott; Chunxue Wang; Nancy Wickersham; J Brennan McNeil; Alejandra Jauregui; Serena Ke; Kathryn Vessel; Antonio Gomez; Carolyn M Hendrickson; Kirsten N Kangelaris; Aartik Sarma; Aleksandra Leligdowicz; Kathleen D Liu; Michael A Matthay; Lorraine B Ware; Carolyn S Calfee
Journal:  Thorax       Date:  2021-07-12       Impact factor: 9.139

10.  Pediatric sepsis phenotypes for enhanced therapeutics: An application of clustering to electronic health records.

Authors:  Ioannis Koutroulis; Tom Velez; Tony Wang; Seife Yohannes; Jessica E Galarraga; Joseph A Morales; Robert J Freishtat; James M Chamberlain
Journal:  J Am Coll Emerg Physicians Open       Date:  2022-01-25
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