Literature DB >> 33164550

Individuating Possibly Repurposable Drugs and Drug Targets for COVID-19 Treatment Through Hypothesis-Driven Systems Medicine Using CoVex.

Julian Matschinske1, Marisol Salgado-Albarrán1,2, Sepideh Sadegh1, Dario Bongiovanni3,4,5, Jan Baumbach1, David B Blumenthal1.   

Abstract

Coronavirus disease 2019 (COVID-19), caused by the SARS-CoV-2 virus, has developed into a pandemic causing major disruptions and hundreds of thousands of deaths in wide parts of the world. As of July 3, 2020, neither vaccines nor approved drugs for effective treatment are available. In this article, we showcase how to individuate drug targets and potentially repurposable drugs in silico using CoVex a recently presented systems medicine platform for COVID-19 drug repurposing. Starting from initial hypotheses, CoVex leverages network algorithms to individuate host proteins involved in COVID-19 disease mechanisms, as well as existing drugs targeting these potential drug targets. Our analysis reveals GLA, PLAT, and GGCX as potential drug targets, and urokinase, argatroban, dabigatran etexilate, betrixaban, ximelagatran and anisindione as potentially repurposable drugs.

Entities:  

Keywords:  SARS-CoV-2; network-based drug repurposing; systems medicine

Mesh:

Substances:

Year:  2020        PMID: 33164550      PMCID: PMC7703307          DOI: 10.1089/adt.2020.1010

Source DB:  PubMed          Journal:  Assay Drug Dev Technol        ISSN: 1540-658X            Impact factor:   1.738


  29 in total

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3.  Endothelial cell infection and endotheliitis in COVID-19.

Authors:  Zsuzsanna Varga; Andreas J Flammer; Peter Steiger; Martina Haberecker; Rea Andermatt; Annelies S Zinkernagel; Mandeep R Mehra; Reto A Schuepbach; Frank Ruschitzka; Holger Moch
Journal:  Lancet       Date:  2020-04-21       Impact factor: 79.321

4.  From single drug targets to synergistic network pharmacology in ischemic stroke.

Authors:  Ana I Casas; Ahmed A Hassan; Simon J Larsen; Vanessa Gomez-Rangel; Mahmoud Elbatreek; Pamela W M Kleikers; Emre Guney; Javier Egea; Manuela G López; Jan Baumbach; Harald H H W Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-20       Impact factor: 11.205

5.  IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.

Authors:  Max Kotlyar; Chiara Pastrello; Zara Malik; Igor Jurisica
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

6.  Angiotensin-converting enzyme 2 (ACE2) as a SARS-CoV-2 receptor: molecular mechanisms and potential therapeutic target.

Authors:  Haibo Zhang; Josef M Penninger; Yimin Li; Nanshan Zhong; Arthur S Slutsky
Journal:  Intensive Care Med       Date:  2020-03-03       Impact factor: 17.440

7.  Anticoagulation in COVID-19.

Authors:  Bassam Atallah; Saad I Mallah; Wael AlMahmeed
Journal:  Eur Heart J Cardiovasc Pharmacother       Date:  2020-07-01

8.  Network-based in silico drug efficacy screening.

Authors:  Emre Guney; Jörg Menche; Marc Vidal; Albert-László Barábasi
Journal:  Nat Commun       Date:  2016-02-01       Impact factor: 14.919

Review 9.  PharmGKB: A worldwide resource for pharmacogenomic information.

Authors:  Julia M Barbarino; Michelle Whirl-Carrillo; Russ B Altman; Teri E Klein
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2018-02-23

Review 10.  Immune Factors in Deep Vein Thrombosis Initiation.

Authors:  Ivan Budnik; Alexander Brill
Journal:  Trends Immunol       Date:  2018-05-16       Impact factor: 16.687

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  4 in total

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Journal:  Cell Death Dis       Date:  2021-01-05       Impact factor: 8.469

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Journal:  Cell Biosci       Date:  2021-08-22       Impact factor: 7.133

3.  Target Discovery for Host-Directed Antiviral Therapies: Application of Proteomics Approaches.

Authors:  Merve Cakir; Kirsten Obernier; Antoine Forget; Nevan J Krogan
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4.  CTCFL regulates the PI3K-Akt pathway and it is a target for personalized ovarian cancer therapy.

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  4 in total

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