Literature DB >> 33164530

DNA-Origami-Based Fluorescence Brightness Standards for Convenient and Fast Protein Counting in Live Cells.

Nathan D Williams1,2, Ane Landajuela2,3, Ravi Kiran Kasula1, Wenjiao Zhou1,2, John T Powell1,2, Zhiqun Xi1, Farren J Isaacs4,5,6, Julien Berro1,2,7, Derek Toomre1, Erdem Karatekin2,3,7,8, Chenxiang Lin1,2.   

Abstract

Fluorescence microscopy has been one of the most discovery-rich methods in biology. In the digital age, the discipline is becoming increasingly quantitative. Virtually all biological laboratories have access to fluorescence microscopes, but abilities to quantify biomolecule copy numbers are limited by the complexity and sophistication associated with current quantification methods. Here, we present DNA-origami-based fluorescence brightness standards for counting 5-300 copies of proteins in bacterial and mammalian cells, tagged with fluorescent proteins or membrane-permeable organic dyes. Compared to conventional quantification techniques, our brightness standards are robust, straightforward to use, and compatible with nearly all fluorescence imaging applications, thereby providing a practical and versatile tool to quantify biomolecules via fluorescence microscopy.

Entities:  

Keywords:  Bioconjugation; Brightness standard; DNA origami; Fluorescent protein; Live cell imaging; Quantitative microscopy

Mesh:

Substances:

Year:  2020        PMID: 33164530      PMCID: PMC7726105          DOI: 10.1021/acs.nanolett.0c03925

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  63 in total

1.  Fluorescence correlation spectroscopy: molecular complexing in solution and in living cells.

Authors:  Dylan A Bulseco; David E Wolf
Journal:  Methods Cell Biol       Date:  2013       Impact factor: 1.441

Review 2.  From Flat to Curved Clathrin: Controlling a Plastic Ratchet.

Authors:  Kem A Sochacki; Justin W Taraska
Journal:  Trends Cell Biol       Date:  2018-12-28       Impact factor: 20.808

3.  Enantioselective Heck arylations of acyclic alkenyl alcohols using a redox-relay strategy.

Authors:  Erik W Werner; Tian-Sheng Mei; Alexander J Burckle; Matthew S Sigman
Journal:  Science       Date:  2012-12-14       Impact factor: 47.728

4.  Copper-Catalyzed Azide-Alkyne Click Chemistry for Bioconjugation.

Authors:  Stanislav I Presolski; Vu Phong Hong; M G Finn
Journal:  Curr Protoc Chem Biol       Date:  2011-12-01

5.  Determining absolute protein numbers by quantitative fluorescence microscopy.

Authors:  Jolien Suzanne Verdaasdonk; Josh Lawrimore; Kerry Bloom
Journal:  Methods Cell Biol       Date:  2014       Impact factor: 1.441

6.  Retromer forms low order oligomers on supported lipid bilayers.

Authors:  Catherine L Deatherage; Joerg Nikolaus; Erdem Karatekin; Christopher G Burd
Journal:  J Biol Chem       Date:  2020-07-10       Impact factor: 5.157

7.  Synergies between Aip1p and capping protein subunits (Acp1p and Acp2p) in clathrin-mediated endocytosis and cell polarization in fission yeast.

Authors:  Julien Berro; Thomas D Pollard
Journal:  Mol Biol Cell       Date:  2014-08-20       Impact factor: 4.138

8.  A DNA origami platform for quantifying protein copy number in super-resolution.

Authors:  Francesca Cella Zanacchi; Carlo Manzo; Angel S Alvarez; Nathan D Derr; Maria F Garcia-Parajo; Melike Lakadamyali
Journal:  Nat Methods       Date:  2017-06-26       Impact factor: 28.547

9.  Self-assembly of DNA into nanoscale three-dimensional shapes.

Authors:  Shawn M Douglas; Hendrik Dietz; Tim Liedl; Björn Högberg; Franziska Graf; William M Shih
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

10.  MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis.

Authors:  Adrien Ducret; Ellen M Quardokus; Yves V Brun
Journal:  Nat Microbiol       Date:  2016-06-20       Impact factor: 17.745

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  2 in total

1.  Probing cell membrane integrity using a histone-targeting protein nanocage displaying precisely positioned fluorophores.

Authors:  Ti Fang; Chaoqun Li; Ao Liang; Hui Zhang; Fan Zhang; Xian-En Zhang; Yi-Yu Yang; Feng Li
Journal:  Nano Res       Date:  2022-09-02       Impact factor: 10.269

2.  FisB relies on homo-oligomerization and lipid binding to catalyze membrane fission in bacteria.

Authors:  Ane Landajuela; Martha Braun; Christopher D A Rodrigues; Alejandro Martínez-Calvo; Thierry Doan; Florian Horenkamp; Anna Andronicos; Vladimir Shteyn; Nathan D Williams; Chenxiang Lin; Ned S Wingreen; David Z Rudner; Erdem Karatekin
Journal:  PLoS Biol       Date:  2021-06-29       Impact factor: 8.029

  2 in total

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