Literature DB >> 33164116

Genomic and phylodynamic analysis of sapoviruses isolated in Henan Province, China.

Jinjin Liu1, Na Ren1, Shanlei Hu1, Lijun Zheng1, Lili Ge2, Shuhuan Ma3, Yuqi Huo4.   

Abstract

In this study, we determined the near-complete and partial genome sequences of ten SaV isolates. Phylogenetic analysis based on full-length VP1 and RdRp nucleotide sequences indicated that nine isolates were of GI.1 and one was GII.3. Evolutionary dynamics analysis indicated that GI.1 and GII.3 SaVs evolved at different rates, the latter evolving more rapidly. Cluster analysis indicated that distantly related GI.1 SaVs were more similar in their amino acid compositions than were GII.3 SaVs. The data provided in this study may facilitate studies on SaV genomic diversity and epidemiological patterns in China and worldwide.

Year:  2020        PMID: 33164116     DOI: 10.1007/s00705-020-04876-0

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.574


  1 in total

1.  Detection of multiple sapovirus genotypes and genogroups in oyster-associated outbreaks.

Authors:  Reiko Nakagawa-Okamoto; Tomoko Arita-Nishida; Shoichi Toda; Hirotomo Kato; Hiroyuki Iwata; Miho Akiyama; Osamu Nishio; Hirokazu Kimura; Mamoru Noda; Naokazu Takeda; Tomoichiro Oka
Journal:  Jpn J Infect Dis       Date:  2009-01       Impact factor: 1.362

  1 in total

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