Irina Tanuwidjaja1,2, Cordula Vogel3,4, Geertje J Pronk3,5,6, Anne Schöler1, Susanne Kublik1, Gisle Vestergaard1,7, Ingrid Kögel-Knabner3,5, Mirna Mrkonjic Fuka2, Michael Schloter1,3, Stefanie Schulz8. 1. Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, Oberschleißheim, Germany. 2. Department of Microbiology, Faculty of Agriculture, University of Zagreb, Zagreb, Croatia. 3. Lehrstuhl für Bodenkunde, Technische Universität München, Freising-Weihenstephan, Germany. 4. Institute of Soil Science and Site Ecology, Dresden University of Technology, Tharandt, Germany. 5. Institute for Advanced Study, Technische Universität München, Garching, Germany. 6. KWR Watercycle Research Institute, Nieuwegein, Netherlands. 7. Department of Health Technology, Technical University of Denmark, Kongens Lyngby, Denmark. 8. Research Unit Comparative Microbiome Analysis, Helmholtz Zentrum München, Oberschleißheim, Germany. stefanie.schulz@helmholtz-muenchen.de.
Abstract
Nutrient turnover in soils is strongly driven by soil properties, including clay mineral composition. One main nutrient is phosphorus (P), which is known to be easily immobilized in soil. Therefore, the specific surface characteristics of clay minerals might substantially influence P availability in soil and thus the microbial strategies for accessing P pools. We used a metagenomic approach to analyze the microbial potential to access P after 842 days of incubation in artificial soils with a clay mineral composition of either non-expandable illite (IL) or expandable montmorillonite (MT), which differ in their surface characteristics like soil surface area and surface charge. Our data indicate that microorganisms of the two soils developed different strategies to overcome P depletion, resulting in similar total P concentrations. Genes predicted to encode inorganic pyrophosphatase (ppa), exopolyphosphatase (ppx), and the pstSCAB transport system were higher in MT, suggesting effective P uptake and the use of internal poly-P stores. Genes predicted to encode enzymes involved in organic P turnover like alkaline phosphatases (phoA, phoD) and glycerophosphoryl diester phosphodiesterase were detected in both soils in comparable numbers. In addition, Po concentrations did not differ significantly. Most identified genes were assigned to microbial lineages generally abundant in agricultural fields, but some were assigned to lineages known to include oligotrophic specialists, such as Bacillaceae and Microchaetaceae.
n class="Chemical">Nutrienpan>t turnover in soils is stronpan>gly drivenpan> by soil properties, inn class="Chemical">cluding clay mineralcomposition. One main nutrient is phosphorus (P), which is known to be easily immobilized in soil. Therefore, the specific surface characteristics of clay minerals might substantially influence P availability in soil and thus the microbial strategies for accessing P pools. We used a metagenomic approach to analyze the microbialpotential to access P after 842 days of incubation in artificial soils with a clay mineralcomposition of either non-expandable illite (IL) or expandable montmorillonite (MT), which differ in their surface characteristics like soil surface area and surface charge. Our data indicate that microorganisms of the two soils developed different strategies to overcome P depletion, resulting in similar total P concentrations. Genes predicted to encode inorganic pyrophosphatase (ppa), exopolyphosphatase (ppx), and the pstSCAB transport system were higher in MT, suggesting effective P uptake and the use of internalpoly-P stores. Genes predicted to encode enzymes involved in organic P turnover like alkaline phosphatases (phoA, phoD) and glycerophosphoryl diester phosphodiesterase were detected in both soils in comparable numbers. In addition, Poconcentrations did not differ significantly. Most identified genes were assigned to microbial lineages generally abundant in agricultural fields, but some were assigned to lineages known to include oligotrophic specialists, such as Bacillaceae and Microchaetaceae.
Entities:
Keywords:
Artificial soils; Bacterial P turnover; Exopolyphosphatase; Inorganic pyrophosphatase; Metagenomics
Authors: Daniel H Huson; Suparna Mitra; Hans-Joachim Ruscheweyh; Nico Weber; Stephan C Schuster Journal: Genome Res Date: 2011-06-20 Impact factor: 9.043
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