Literature DB >> 33161521

Microbial Key Players Involved in P Turnover Differ in Artificial Soil Mixtures Depending on Clay Mineral Composition.

Irina Tanuwidjaja1,2, Cordula Vogel3,4, Geertje J Pronk3,5,6, Anne Schöler1, Susanne Kublik1, Gisle Vestergaard1,7, Ingrid Kögel-Knabner3,5, Mirna Mrkonjic Fuka2, Michael Schloter1,3, Stefanie Schulz8.   

Abstract

n class="Chemical">Nutrienpan>t turnover in soils is stronpan>gly drivenpan> by soil properties, inn class="Chemical">cluding clay mineral composition. One main nutrient is phosphorus (P), which is known to be easily immobilized in soil. Therefore, the specific surface characteristics of clay minerals might substantially influence P availability in soil and thus the microbial strategies for accessing P pools. We used a metagenomic approach to analyze the microbial potential to access P after 842 days of incubation in artificial soils with a clay mineral composition of either non-expandable illite (IL) or expandable montmorillonite (MT), which differ in their surface characteristics like soil surface area and surface charge. Our data indicate that microorganisms of the two soils developed different strategies to overcome P depletion, resulting in similar total P concentrations. Genes predicted to encode inorganic pyrophosphatase (ppa), exopolyphosphatase (ppx), and the pstSCAB transport system were higher in MT, suggesting effective P uptake and the use of internal poly-P stores. Genes predicted to encode enzymes involved in organic P turnover like alkaline phosphatases (phoA, phoD) and glycerophosphoryl diester phosphodiesterase were detected in both soils in comparable numbers. In addition, Po concentrations did not differ significantly. Most identified genes were assigned to microbial lineages generally abundant in agricultural fields, but some were assigned to lineages known to include oligotrophic specialists, such as Bacillaceae and Microchaetaceae.

Entities:  

Keywords:  Artificial soils; Bacterial P turnover; Exopolyphosphatase; Inorganic pyrophosphatase; Metagenomics

Year:  2020        PMID: 33161521     DOI: 10.1007/s00248-020-01635-1

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  20 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Integrative analysis of environmental sequences using MEGAN4.

Authors:  Daniel H Huson; Suparna Mitra; Hans-Joachim Ruscheweyh; Nico Weber; Stephan C Schuster
Journal:  Genome Res       Date:  2011-06-20       Impact factor: 9.043

3.  Fast and sensitive protein alignment using DIAMOND.

Authors:  Benjamin Buchfink; Chao Xie; Daniel H Huson
Journal:  Nat Methods       Date:  2014-11-17       Impact factor: 28.547

4.  Establishment of phosphate-solubilizing strains of Azotobacter chroococcum in the rhizosphere and their effect on wheat cultivars under green house conditions.

Authors:  V Kumar; R K Behl; N Narula
Journal:  Microbiol Res       Date:  2001       Impact factor: 5.415

5.  Metal oxides, clay minerals and charcoal determine the composition of microbial communities in matured artificial soils and their response to phenanthrene.

Authors:  Doreen Babin; Guo-Chun Ding; Geertje Johanna Pronk; Katja Heister; Ingrid Kögel-Knabner; Kornelia Smalla
Journal:  FEMS Microbiol Ecol       Date:  2013-01-21       Impact factor: 4.194

6.  Mineral composition and charcoal determine the bacterial community structure in artificial soils.

Authors:  Guo-Chun Ding; Geertje Johanna Pronk; Doreen Babin; Holger Heuer; Katja Heister; Ingrid Kögel-Knabner; Kornelia Smalla
Journal:  FEMS Microbiol Ecol       Date:  2013-01-24       Impact factor: 4.194

7.  Fast identification and removal of sequence contamination from genomic and metagenomic datasets.

Authors:  Robert Schmieder; Robert Edwards
Journal:  PLoS One       Date:  2011-03-09       Impact factor: 3.240

8.  On the optimal trimming of high-throughput mRNA sequence data.

Authors:  Matthew D Macmanes
Journal:  Front Genet       Date:  2014-01-31       Impact factor: 4.599

9.  AdapterRemoval v2: rapid adapter trimming, identification, and read merging.

Authors:  Mikkel Schubert; Stinus Lindgreen; Ludovic Orlando
Journal:  BMC Res Notes       Date:  2016-02-12

10.  Population densities and genetic diversity of actinomycetes associated to the rhizosphere of Theobroma cacao.

Authors:  Tâmara R Barreto; Augusto C M da Silva; Ana Cristina F Soares; Jorge T de Souza
Journal:  Braz J Microbiol       Date:  2008-09-01       Impact factor: 2.476

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  1 in total

1.  Effects of Spartina alterniflora Invasion on Nitrogen Fixation and Phosphorus Solubilization in a Subtropical Marine Mangrove Ecosystem.

Authors:  Zufan Zhang; Shiqing Nie; Yimeng Sang; Shuming Mo; Jinhui Li; Muhammad Kashif; Guijiao Su; Bing Yan; Chengjian Jiang
Journal:  Microbiol Spectr       Date:  2022-05-23
  1 in total

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