Literature DB >> 33159288

DNA isolated from formalin-fixed paraffin-embedded healthy tissue after 30 years of storage can be used for forensic studies.

Katarina Vitošević1, Miloš Todorović1, Živana Slović1, Tatjana Varljen2, Stevan Matić3, Danijela Todorović4.   

Abstract

Tissue formalin fixation and paraffin embedding (FFPE) is a standard method for long-term preservation and morphological and molecular analysis. The aim of this study was to analyze the effect of storage time on the integrity of DNA isolated from three different healthy FFPE tissues. DNA was isolated from FFPE heart, liver and brain tissues obtained from autopsy and archived from 1988 to 2017 using two different methods of DNA isolation: phenol-chloroform-isoamyl alcohol (PCI) and PureLink Genomic DNA Kit. The quantification and purity of DNA was measured spectrophotometrically at 260 nm and 280 nm. The quality of isolated DNA was evaluated by PCR amplification of GPD1 (150 bp), ACTB (262 bp) and RPL4 (407 bp) genes. The histomorphological characteristics of FFPE tissues were not significantly changed during 30 years of storage. Higher yield (272.9 ± 10.3 µg) and purity (A260/280 = 2.05) of DNA was obtained using the PCI method for DNA isolation from FFPE liver tissue. The PCI extraction method showed reproducible and consistent results in PCR amplification of all of three examined genes. The GPD1 gene can be amplified up to 30 years, the ACTB gene in the same samples up to 26 years and the RPL4 gene up to 6 years of storage in FFPE blocks. Although the best yield and purity of isolated DNA (using both isolation methods) was obtained from FFPE liver tissue, the DNA with the most preserved integrity was obtained from brain tissue archived up to 30 years. This is the first report using long-term archived healthy FFPE tissues (up to 30 years) that shows that the DNA isolated from these tissues is of preserved integrity and can be used in molecular autopsy.

Entities:  

Keywords:  Autopsy; DNA degradation; DNA isolation; Formalin-fixed paraffin-embedded tissue; PCR

Year:  2020        PMID: 33159288     DOI: 10.1007/s12024-020-00327-z

Source DB:  PubMed          Journal:  Forensic Sci Med Pathol        ISSN: 1547-769X            Impact factor:   2.007


  40 in total

1.  SNP-minisequencing as an excellent tool for analysing degraded DNA recovered from archival tissues.

Authors:  Katarzyna Babol-Pokora; Jarosław Berent
Journal:  Acta Biochim Pol       Date:  2008-11-04       Impact factor: 2.149

2.  Analysis of DNA sequences in forty-year-old paraffin-embedded thin-tissue sections: a bridge between molecular biology and classical histology.

Authors:  D Shibata; W J Martin; N Arnheim
Journal:  Cancer Res       Date:  1988-08-15       Impact factor: 12.701

3.  DNA extraction and molecular analysis of non-tumoral liver, spleen, and brain from autopsy samples: the effect of formalin fixation and paraffin embedding.

Authors:  Karina Silva Funabashi; Denise Barcelos; Iria Visoná; Marcelo Souza e Silva; Maria Luiza Almeida Prado Oliveira e Sousa; Marcello Fabiano de Franco; Edna Sadayo Miazato Iwamura
Journal:  Pathol Res Pract       Date:  2012-08-21       Impact factor: 3.250

Review 4.  A review of the optimisation of the use of formalin fixed paraffin embedded tissue for molecular analysis in a forensic post-mortem setting.

Authors:  Kate Megan Reid; Sairita Maistry; Raj Ramesar; Laura Jane Heathfield
Journal:  Forensic Sci Int       Date:  2017-10-13       Impact factor: 2.395

5.  Ultrasound-accelerated formalin fixation of tissue improves morphology, antigen and mRNA preservation.

Authors:  Wei-Sing Chu; Bungo Furusato; Kondi Wong; Isabell A Sesterhenn; Fathollah K Mostofi; Min Qi Wei; Zhenqing Zhu; Susan L Abbondanzo; Qi Liang
Journal:  Mod Pathol       Date:  2005-06       Impact factor: 7.842

6.  Malignant tumors and forensics--dilemmas and proposals.

Authors:  Zoran Budimlija; Connie Lu; Grace Axler-DiPerte; Jessica Seifarth; Dorota Popiolek; Franz Fogt; Mechthild Prinz
Journal:  Croat Med J       Date:  2009-06       Impact factor: 1.351

7.  Improved PCR performance using template DNA from formalin-fixed and paraffin-embedded tissues by overcoming PCR inhibition.

Authors:  Dimo Dietrich; Barbara Uhl; Verena Sailer; Emily Eva Holmes; Maria Jung; Sebastian Meller; Glen Kristiansen
Journal:  PLoS One       Date:  2013-10-14       Impact factor: 3.240

8.  Comparison of methods for the extraction of DNA from formalin-fixed, paraffin-embedded archival tissues.

Authors:  Burcu Sengüven; Emre Baris; Tulin Oygur; Mehmet Berktas
Journal:  Int J Med Sci       Date:  2014-03-27       Impact factor: 3.738

9.  The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?

Authors:  M Thomas P Gilbert; Tamara Haselkorn; Michael Bunce; Juan J Sanchez; Sebastian B Lucas; Laurence D Jewell; Eric Van Marck; Michael Worobey
Journal:  PLoS One       Date:  2007-06-20       Impact factor: 3.240

10.  Comparison of two methods of RNA extraction from formalin-fixed paraffin-embedded tissue specimens.

Authors:  Gisele Rodrigues Gouveia; Suzete Cleusa Ferreira; Jerenice Esdras Ferreira; Sheila Aparecida Coelho Siqueira; Juliana Pereira
Journal:  Biomed Res Int       Date:  2014-07-03       Impact factor: 3.411

View more
  2 in total

1.  Practical tips to using formalin-fixed paraffin-embedded tissue archives for molecular diagnostics in a South African setting.

Authors:  Barbara S van Deventer; Lorraine du Toit-Prinsloo; Chantal van Niekerk
Journal:  Afr J Lab Med       Date:  2022-06-23

2.  Long-term whole blood DNA preservation by cost-efficient cryosilicification.

Authors:  Liang Zhou; Qi Lei; Jimin Guo; Yuanyuan Gao; Jianjun Shi; Hong Yu; Wenxiang Yin; Jiangfan Cao; Botao Xiao; Jacopo Andreo; Romy Ettlinger; C Jeffrey Brinker; Stefan Wuttke; Wei Zhu
Journal:  Nat Commun       Date:  2022-10-21       Impact factor: 17.694

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.