Literature DB >> 33154236

Can quantitative RT-PCR for SARS-CoV-2 help in better management of patients and control of coronavirus disease 2019 pandemic.

Ashok Rattan1, Hafiz Ahmad2.   

Abstract

The emergence of SARS-CoV-2, the causative agent of coronavirus disease 2019 (COVID-19), represents a public health emergency of unprecedented proportion. The global containment efforts have been focused on testing, tracing of contacts and treatment (isolation) of those found COVID-19 positive. Since the whole genome sequences of a number of strains of this novel RNA virus were available in the public domain by early January 2020, a number of real-time polymerase chain reaction (RT-PCR) protocols were designed and used for diagnosis of this infection. Most RT-PCRs are designed for qualitative COVID-19 reporting (SARS-CoV-2 detected or not detected), but have been used for semi-quantitative estimation of viral load based on cycle threshold value. Our manuscript discusses the utility of quantitative PCR testing for COVID-19 and its patient management benefits.

Entities:  

Keywords:  Coronavirus disease 2019; SARS-CoV-2; cycle threshold; patient management; quantitative RT-PCR

Mesh:

Substances:

Year:  2020        PMID: 33154236      PMCID: PMC7709651          DOI: 10.4103/ijmm.IJMM_20_380

Source DB:  PubMed          Journal:  Indian J Med Microbiol        ISSN: 0255-0857            Impact factor:   0.985


  19 in total

1.  Temporal dynamics in viral shedding and transmissibility of COVID-19.

Authors:  Xi He; Eric H Y Lau; Peng Wu; Xilong Deng; Jian Wang; Xinxin Hao; Yiu Chung Lau; Jessica Y Wong; Yujuan Guan; Xinghua Tan; Xiaoneng Mo; Yanqing Chen; Baolin Liao; Weilie Chen; Fengyu Hu; Qing Zhang; Mingqiu Zhong; Yanrong Wu; Lingzhai Zhao; Fuchun Zhang; Benjamin J Cowling; Fang Li; Gabriel M Leung
Journal:  Nat Med       Date:  2020-04-15       Impact factor: 53.440

2.  Can the Severe Acute Respiratory Syndrome Coronavirus 2 Polymerase Chain Reaction Cycle Threshold Value and Time From Symptom Onset to Testing Predict Infectivity?

Authors:  Matthew J Binnicker
Journal:  Clin Infect Dis       Date:  2020-12-17       Impact factor: 9.079

3.  A SARS-CoV-2 surrogate virus neutralization test based on antibody-mediated blockage of ACE2-spike protein-protein interaction.

Authors:  Chee Wah Tan; Wan Ni Chia; Xijian Qin; Pei Liu; Mark I-C Chen; Charles Tiu; Zhiliang Hu; Vivian Chih-Wei Chen; Barnaby E Young; Wan Rong Sia; Yee-Joo Tan; Randy Foo; Yongxiang Yi; David C Lye; Danielle E Anderson; Lin-Fa Wang
Journal:  Nat Biotechnol       Date:  2020-07-23       Impact factor: 54.908

4.  Virological assessment of hospitalized patients with COVID-2019.

Authors:  Roman Wölfel; Victor M Corman; Wolfgang Guggemos; Michael Seilmaier; Sabine Zange; Marcel A Müller; Daniela Niemeyer; Terry C Jones; Patrick Vollmar; Camilla Rothe; Michael Hoelscher; Tobias Bleicker; Sebastian Brünink; Julia Schneider; Rosina Ehmann; Katrin Zwirglmaier; Christian Drosten; Clemens Wendtner
Journal:  Nature       Date:  2020-04-01       Impact factor: 49.962

Review 5.  Variation in False-Negative Rate of Reverse Transcriptase Polymerase Chain Reaction-Based SARS-CoV-2 Tests by Time Since Exposure.

Authors:  Lauren M Kucirka; Stephen A Lauer; Oliver Laeyendecker; Denali Boon; Justin Lessler
Journal:  Ann Intern Med       Date:  2020-05-13       Impact factor: 25.391

6.  SARS-CoV-2 Viral Load in Upper Respiratory Specimens of Infected Patients.

Authors:  Lirong Zou; Feng Ruan; Mingxing Huang; Lijun Liang; Huitao Huang; Zhongsi Hong; Jianxiang Yu; Min Kang; Yingchao Song; Jinyu Xia; Qianfang Guo; Tie Song; Jianfeng He; Hui-Ling Yen; Malik Peiris; Jie Wu
Journal:  N Engl J Med       Date:  2020-02-19       Impact factor: 91.245

7.  Profiling Early Humoral Response to Diagnose Novel Coronavirus Disease (COVID-19).

Authors:  Li Guo; Lili Ren; Siyuan Yang; Meng Xiao; Fan Yang; Charles S Dela Cruz; Yingying Wang; Chao Wu; Yan Xiao; Lulu Zhang; Lianlian Han; Shengyuan Dang; Yan Xu; Qi-Wen Yang; Sheng-Yong Xu; Hua-Dong Zhu; Ying-Chun Xu; Qi Jin; Lokesh Sharma; Linghang Wang; Jianwei Wang
Journal:  Clin Infect Dis       Date:  2020-07-28       Impact factor: 9.079

8.  SARS-CoV-2 genomic and subgenomic RNAs in diagnostic samples are not an indicator of active replication.

Authors:  Soren Alexandersen; Anthony Chamings; Tarka Raj Bhatta
Journal:  Nat Commun       Date:  2020-11-27       Impact factor: 14.919

9.  SARS-CoV-2 viral load predicts COVID-19 mortality.

Authors:  Elisabet Pujadas; Fayzan Chaudhry; Russell McBride; Felix Richter; Shan Zhao; Ania Wajnberg; Girish Nadkarni; Benjamin S Glicksberg; Jane Houldsworth; Carlos Cordon-Cardo
Journal:  Lancet Respir Med       Date:  2020-08-06       Impact factor: 30.700

10.  Clinical sensitivity and interpretation of PCR and serological COVID-19 diagnostics for patients presenting to the hospital.

Authors:  Tyler E Miller; Wilfredo F Garcia Beltran; Adam Z Bard; Tasos Gogakos; Melis N Anahtar; Michael Gerino Astudillo; Diane Yang; Julia Thierauf; Adam S Fisch; Grace K Mahowald; Megan J Fitzpatrick; Valentina Nardi; Jared Feldman; Blake M Hauser; Timothy M Caradonna; Hetal D Marble; Lauren L Ritterhouse; Sara E Turbett; Julie Batten; Nicholas Zeke Georgantas; Galit Alter; Aaron G Schmidt; Jason B Harris; Jeffrey A Gelfand; Mark C Poznansky; Bradley E Bernstein; David N Louis; Anand Dighe; Richelle C Charles; Edward T Ryan; John A Branda; Virginia M Pierce; Mandakolathur R Murali; A John Iafrate; Eric S Rosenberg; Jochen K Lennerz
Journal:  FASEB J       Date:  2020-08-28       Impact factor: 5.834

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  1 in total

1.  Coronavirus Disease 2019 (COVID-19) in Italy: Double Reading of Chest CT Examination.

Authors:  Alfonso Reginelli; Roberta Grassi; Beatrice Feragalli; Maria Paola Belfiore; Alessandro Montanelli; Gianluigi Patelli; Michelearcangelo La Porta; Fabrizio Urraro; Roberta Fusco; Vincenza Granata; Antonella Petrillo; Giuliana Giacobbe; Gaetano Maria Russo; Palmino Sacco; Roberto Grassi; Salvatore Cappabianca
Journal:  Biology (Basel)       Date:  2021-01-25
  1 in total

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