Literature DB >> 33152902

Omics technologies for improved diagnosis and treatment of colorectal cancer: Technical advancement and major perspectives.

Nishu Dalal1, Rekha Jalandra2, Minakshi Sharma3, Hridayesh Prakash4, Govind K Makharia5, Pratima R Solanki6, Rajeev Singh7, Anil Kumar8.   

Abstract

Colorectal cancer (CRC) ranks third among the most commonly occurring cancers worldwide, and it causes half a million deaths annually. Alongside mechanistic study for CRC detection and treatment by conventional techniques, new technologies have been developed to study CRC. These technologies include genomics, transcriptomics, proteomics, and metabolomics which elucidate DNA markers, RNA transcripts, protein and, metabolites produced inside the colon and rectum part of the gut. All these approaches form the omics arena, which presents a remarkable opportunity for the discovery of novel prognostic, diagnostic and therapeutic biomarkers and also delineate the underlying mechanism of CRC causation, which may further help in devising treatment strategies. This review also mentions the latest developments in metagenomics and culturomics as emerging evidence suggests that metagenomics of gut microbiota has profound implications in the causation, prognosis, and treatment of CRC. A majority of bacteria cannot be studied as they remain unculturable, so culturomics has also been strengthened to develop culture conditions suitable for the growth of unculturable bacteria and identify unknown bacteria. The overall purpose of this review is to succinctly evaluate the application of omics technologies in colorectal cancer research for improving the diagnosis and treatment strategies.
Copyright © 2020 The Authors. Published by Elsevier Masson SAS.. All rights reserved.

Entities:  

Keywords:  Biomarkers; Colorectal cancer; Microbiota; Omics; Transcriptomics

Mesh:

Year:  2020        PMID: 33152902     DOI: 10.1016/j.biopha.2020.110648

Source DB:  PubMed          Journal:  Biomed Pharmacother        ISSN: 0753-3322            Impact factor:   6.529


  14 in total

Review 1.  Gut microbiota-derived metabolites in CRC progression and causation.

Authors:  Nishu Dalal; Rekha Jalandra; Nitin Bayal; Amit K Yadav; Minakshi Sharma; Govind K Makharia; Pramod Kumar; Rajeev Singh; Pratima R Solanki; Anil Kumar
Journal:  J Cancer Res Clin Oncol       Date:  2021-07-17       Impact factor: 4.553

2.  Prognostic and immunological roles of Fc fragment of IgG binding protein in colorectal cancer.

Authors:  Qunchuan Zhuang; Aling Shen; Liya Liu; Meizhu Wu; Zhiqing Shen; Huixin Liu; Ying Cheng; Xiaoying Lin; Xiangyan Wu; Wei Lin; Jiapeng Li; Yuying Han; Xiaoping Chen; Qi Chen; Jun Peng
Journal:  Oncol Lett       Date:  2021-05-13       Impact factor: 2.967

Review 3.  What Is Known about Theragnostic Strategies in Colorectal Cancer.

Authors:  Alessandro Parisi; Giampiero Porzio; Fanny Pulcini; Katia Cannita; Corrado Ficorella; Vincenzo Mattei; Simona Delle Monache
Journal:  Biomedicines       Date:  2021-02-01

4.  Mesenchymal Stem Cell-derived Extracellular Vesicles Transmitting MicroRNA-34a-5p Suppress Tumorigenesis of Colorectal Cancer Through c-MYC/DNMT3a/PTEN Axis.

Authors:  Jiangning Zhao; Huanrong Lin; Kunsong Huang
Journal:  Mol Neurobiol       Date:  2021-10-08       Impact factor: 5.682

Review 5.  The Application of Metabolomics in Recent Colorectal Cancer Studies: A State-of-the-Art Review.

Authors:  Andrew Gold; Fouad Choueiry; Ning Jin; Xiaokui Mo; Jiangjiang Zhu
Journal:  Cancers (Basel)       Date:  2022-01-30       Impact factor: 6.575

Review 6.  Alterations in the Gut Microbiota and Their Metabolites in Colorectal Cancer: Recent Progress and Future Prospects.

Authors:  Jing Li; Ai-Hua Zhang; Fang-Fang Wu; Xi-Jun Wang
Journal:  Front Oncol       Date:  2022-02-11       Impact factor: 6.244

Review 7.  Systems-level biomarkers identification and drug repositioning in colorectal cancer.

Authors:  Hande Beklen; Esra Yildirim; Medi Kori; Beste Turanli; Kazim Yalcin Arga
Journal:  World J Gastrointest Oncol       Date:  2021-07-15

Review 8.  Multi-Omics Advancements towards Plasmodium vivax Malaria Diagnosis.

Authors:  Shalini Aggarwal; Weng Kung Peng; Sanjeeva Srivastava
Journal:  Diagnostics (Basel)       Date:  2021-11-28

9.  Interplay between Genome, Metabolome and Microbiome in Colorectal Cancer.

Authors:  Koldo Garcia-Etxebarria; Marc Clos-Garcia; Oiana Telleria; Beatriz Nafría; Cristina Alonso; Marta Iruarrizaga-Lejarreta; Andre Franke; Anais Crespo; Agueda Iglesias; Joaquín Cubiella; Luis Bujanda; Juan Manuel Falcón-Pérez
Journal:  Cancers (Basel)       Date:  2021-12-10       Impact factor: 6.639

10.  Circadian Clock Genes Are Correlated with Prognosis and Immune Cell Infiltration in Colon Adenocarcinoma.

Authors:  Aoxiao He; Zhihao Huang; Rongguiyi Zhang; Hongcheng Lu; Jiakun Wang; Jiaqing Cao; Qian Feng
Journal:  Comput Math Methods Med       Date:  2022-01-25       Impact factor: 2.238

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