| Literature DB >> 33138859 |
Joshua Guoxian Wong1, Aung-Hein Aung1, Weixiang Lian1, David Chien Lye2,3,4,5, Chee-Kheong Ooi6, Angela Chow7,8,9.
Abstract
BACKGROUND: Appropriate antibiotic prescribing is key to combating antimicrobial resistance. Upper respiratory tract infections (URTIs) are common reasons for emergency department (ED) visits and antibiotic use. Differentiating between bacterial and viral infections is not straightforward. We aim to provide an evidence-based clinical decision support tool for antibiotic prescribing using prediction models developed from local data.Entities:
Keywords: Adult; Antibiotic prescribing; ED; Machine learning; Prediction model; URTI
Year: 2020 PMID: 33138859 PMCID: PMC7605344 DOI: 10.1186/s13756-020-00825-3
Source DB: PubMed Journal: Antimicrob Resist Infect Control ISSN: 2047-2994 Impact factor: 4.887
Clinical Signs and Symptoms of patients diagnosed with URTI and recommendations on need for antibiotics. The actual counts (percentage) and median (IQR) are reflected for categorical and continuous variables respectively
| Variables | Review of antibiotics recommended (RABX) ( | Antibiotics not recommended (NABX) ( | |
|---|---|---|---|
| Age (years) | 37 (29–54) | 36 (28–50) | 0.170 |
| Gender | 0.009 | ||
| Male | 172 (67.7) | 266 (57.7) | |
| Residency | 0.815 | ||
| Residents | 185 (72.8) | 332 (72.0) | |
| Race | 0.110 | ||
| Chinese | 111 (43.7) | 197 (42.7) | |
| Malay | 40 (15.7) | 98 (21.3) | |
| Indian | 56 (22.0) | 74 (16.0) | |
| Others | 47 (18.6) | 92 (20.0) | |
| Visit Month | 0.211 | ||
| January | 11 (4.3) | 35 (7.6) | |
| February | 15 (5.9) | 24 (5.2) | |
| March | 19 (7.5) | 31 (6.7) | |
| April | 24 (9.4) | 27 (5.9) | |
| May | 20 (7.9) | 38 (8.2) | |
| June | 14 (5.5) | 42 (9.1) | |
| July | 29 (11.4) | 69 (15.0) | |
| August | 24 (9.4) | 40 (8.7) | |
| September | 34 (13.4) | 45 (9.8) | |
| October | 31 (12.2) | 51 (11.1) | |
| November | 14 (5.5) | 34 (7.4) | |
| December | 19 (7.5) | 25 (5.4) | |
| Smoker | 53 (20.9) | 114 (24.7) | 0.123 |
| Influenza Vaccination in the past 1 year | 94 (37.0) | 169 (36.7) | 0.675 |
| Travelled Overseas | 74 (29.1) | 116 (25.2) | 0.250 |
| Prior Consultation in 14 days | 146 (57.5) | 228 (49.5) | 0.040 |
| Prescribed antibiotics during prior consultation | 64 (25.2) | 125 (27.1) | 0.578 |
| Asthma | 36 (14.2) | 91 (19.7) | 0.062 |
| COPD | 40 (15.7) | 77 (16.7) | 0.741 |
| Taking steroids | 12 (4.7) | 44 (9.5) | 0.032 |
| Diabetes mellitus | 25 (9.8) | 39 (8.5) | 0.535 |
| Liver disease | 3 (1.2) | 9 (2.0) | 0.554 |
| Cancer | 11 (4.3) | 8 (1.7) | 0.039 |
| Myocardial Infarction | 8 (3.1) | 12 (2.6) | 0.671 |
| Chronic Heart Failure | 2 (0.8) | 2 (0.4) | 0.618 |
| Renal disease | 4 (1.6) | 5 (1.1) | 0.728 |
| Charlson’s Comorbidity Index >0 | 82 (32.3) | 158 (34.3) | 0.590 |
| Onset of symptoms (days) | 4 (3–7) | 4 (3–7) | 0.438 |
| Fever | 188 (74.0) | 234 (50.8) | < 0.001 |
| Headache | 27 (10.6) | 38 (8.2) | 0.288 |
| Joint pain | 8 (3.1) | 9 (2.0) | 0.315 |
| Abdomen pain | 14 (5.5) | 16 (3.5) | 0.193 |
| Loss of appetite | 23 (9.1) | 35 (7.6) | 0.493 |
| Body ache | 48 (18.9) | 52 (11.3) | 0.005 |
| Diarrhea | 10 (3.9) | 18 (3.9) | 0.983 |
| Runny nose | 116 (45.7) | 244 (52.9) | 0.063 |
| Nausea | 12 (4.7) | 26 (5.6) | 0.602 |
| Red eye | 3 (1.2) | 4 (0.9) | 0.704 |
| Rash | 7 (2.8) | 11 (2.4) | 0.763 |
| Shortness of breath | 38 (15.0) | 107 (23.2) | 0.009 |
| Sore throat | 130 (51.2) | 196 (42.5) | 0.026 |
| Vomiting | 21 (8.3) | 19 (4.1) | 0.021 |
| Giddiness | 8 (3.1) | 33 (7.2) | 0.027 |
| Tiredness | 13 (5.1) | 17 (3.7) | 0.361 |
| Conjunctival congestion | 3 (1.2) | 6 (1.3) | 1.000 |
| Dehydration | 15 (5.9) | 16 (3.5) | 0.126 |
| Injected pharynx | 80 (31.5) | 111 (24.1) | 0.032 |
| Sinus congestion | 3 (1.2) | 2 (0.4) | 0.353 |
| Enlarged tonsil | 6 (2.4) | 9 (2.0) | 0.714 |
| Abnormal findings on abdominal examination | 8 (3.1) | 7 (1.5) | 0.145 |
| Abnormal findings on lungs examination | 19 (7.5) | 50 (10.8) | 0.145 |
| Highest body temp (°C) | 37.4 (36.9–38.4) | 37.0 (36.6–37.3) | < 0.001 |
| Highest pulse rate (beats per minute) | 96 (84–101) | 89 (80–98) | < 0.001 |
| Highest respiratory rate (breaths per minute) | 18 (17–18) | 18 (17–18) | 0.322 |
| Lowest Sa02 level (%) | 98 (96–99) | 98 (97–99) | 0.001 |
| Lowest systolic blood pressure (mmHg) | 117 (105–131) | 122 (111–133) | < 0.001 |
| Lowest diastolic blood pressure (mmHg) | 65 (58–75) | 68 (62–77) | 0.010 |
Fig. 1Summary of virus positivity by C-reactive protein levels
Coefficients from the LASSO and logistic regression models
| Variables | LASSO | Logistic regression |
|---|---|---|
| Age | NA | −0.019 (−0.033 to −0.005) |
| Indian | −0.088 | NA |
| History of Cancer | −0.182 | NA |
| Giddiness | 0.009 | 1.343 (0.178 to 2.507) |
| Fever | −0.248 | −0.607 (−1.056 to −0.158) |
| Shortness of Breath | NA | 0.551 (0.010 to 1.092) |
| Highest Temperature | −0.423 | −0.456 (−0.755 to −0.157) |
| Highest Pulse rate | −0.011 | −0.029 (− 0.046 to − 0.012) |
Fig. 2Algorithm for decision tree
Fig. 3ROC curves for the 3 models
Performance of the 3 models at the optimal cutoff
| Model | Training set | Validation set | ||||||
|---|---|---|---|---|---|---|---|---|
| Sen | Spe | PPV | NPV | Sen | Spe | PPV | NPV | |
| Logistic | 0.78 | 0.51 | 0.74 | 0.56 | 0.72 | 0.65 | 0.78 | 0.56 |
| LASSO | 0.78 | 0.52 | 0.75 | 0.56 | 0.72 | 0.62 | 0.77 | 0.55 |
| CART | 0.76 | 0.50 | 0.74 | 0.54 | 0.77 | 0.49 | 0.62 | 0.66 |
Fig. 4User interface for the “Abx SteWARdS” app