| Literature DB >> 33137644 |
Abstract
Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of individual cell types in the human placenta. However, placental scRNA-Seq data is not readily accessible when trying to understand how expression patterns in model systems correspond to those from first trimester human placenta. Therefore, we developed PlacentaCellEnrich, a tool that takes a gene set as input, and then reports if the input set is enriched for genes with placenta cell-specific expression patterns, based on human placenta scRNA-Seq data. The PlacentaCellEnrich tool is freely available at https://placentacellenrich.gdcb.iastate.edu/ for non-profit academic use under the MIT license.Entities:
Keywords: Cell subtype identification; Decidua; Gene enrichment; Trophoblast; scRNA-seq
Mesh:
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Year: 2020 PMID: 33137644 PMCID: PMC7920947 DOI: 10.1016/j.placenta.2020.10.029
Source DB: PubMed Journal: Placenta ISSN: 0143-4004 Impact factor: 3.481