Literature DB >> 33137472

Sharing voxelwise neuroimaging results from rhesus monkeys and other species with Neurovault.

Andrew S Fox1, Daniel Holley2, Peter Christiaan Klink3, Spencer A Arbuckle4, Carol A Barnes5, Jörn Diedrichsen4, Sze Chai Kwok6, Colin Kyle5, J Andrew Pruszynski4, Jakob Seidlitz7, XuFeng Zhou8, Russell A Poldrack9, Krzysztof J Gorgolewski9.   

Abstract

Animal neuroimaging studies can provide unique insights into brain structure and function, and can be leveraged to bridge the gap between animal and human neuroscience. In part, this power comes from the ability to combine mechanistic interventions with brain-wide neuroimaging. Due to their phylogenetic proximity to humans, nonhuman primate neuroimaging holds particular promise. Because nonhuman primate neuroimaging studies are often underpowered, there is a great need to share data amongst translational researchers. Data sharing efforts have been limited, however, by the lack of standardized tools and repositories through which nonhuman neuroimaging data can easily be archived and accessed. Here, we provide an extension of the Neurovault framework to enable sharing of statistical maps and related voxelwise neuroimaging data from other species and template-spaces. Neurovault, which was previously limited to human neuroimaging data, now allows researchers to easily upload and share nonhuman primate neuroimaging results. This promises to facilitate open, integrative, cross-species science while affording researchers the increased statistical power provided by data aggregation. In addition, the Neurovault code-base now enables the addition of other species and template-spaces. Together, these advances promise to bring neuroimaging data sharing to research in other species, for supplemental data, location-based atlases, and data that would otherwise be relegated to a "file-drawer". As increasing numbers of researchers share their nonhuman neuroimaging data on Neurovault, this resource will enable novel, large-scale, cross-species comparisons that were previously impossible.
Copyright © 2020 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Animal; Data sharing; Neuroimaging; Nonhuman primate; PET; fMRI

Year:  2020        PMID: 33137472      PMCID: PMC7846271          DOI: 10.1016/j.neuroimage.2020.117518

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  29 in total

1.  Functional MRI of macaque monkeys performing a cognitive set-shifting task.

Authors:  Kiyoshi Nakahara; Toshihiro Hayashi; Seiki Konishi; Yasushi Miyashita
Journal:  Science       Date:  2002-02-22       Impact factor: 47.728

2.  The primate amygdala and the neurobiology of social behavior: implications for understanding social anxiety.

Authors:  David G Amaral
Journal:  Biol Psychiatry       Date:  2002-01-01       Impact factor: 13.382

3.  Dorsal Amygdala Neurotrophin-3 Decreases Anxious Temperament in Primates.

Authors:  Andrew S Fox; Tade Souaiaia; Jonathan A Oler; Rothem Kovner; Jae Mun Hugo Kim; Joseph Nguyen; Delores A French; Marissa K Riedel; Eva M Fekete; Matthew R Rabska; Miles E Olsen; Ethan K Brodsky; Andrew L Alexander; Walter F Block; Patrick H Roseboom; James A Knowles; Ned H Kalin
Journal:  Biol Psychiatry       Date:  2019-07-02       Impact factor: 13.382

4.  Intergenerational neural mediators of early-life anxious temperament.

Authors:  Andrew S Fox; Jonathan A Oler; Alexander J Shackman; Steven E Shelton; Muthuswamy Raveendran; D Reese McKay; Alexander K Converse; Andrew Alexander; Richard J Davidson; John Blangero; Jeffrey Rogers; Ned H Kalin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-06       Impact factor: 11.205

Review 5.  A population MRI brain template and analysis tools for the macaque.

Authors:  Jakob Seidlitz; Caleb Sponheim; Daniel Glen; Frank Q Ye; Kadharbatcha S Saleem; David A Leopold; Leslie Ungerleider; Adam Messinger
Journal:  Neuroimage       Date:  2017-04-28       Impact factor: 6.556

6.  Nonhuman primate models to study anxiety, emotion regulation, and psychopathology.

Authors:  Ned H Kalin; Steven E Shelton
Journal:  Ann N Y Acad Sci       Date:  2003-12       Impact factor: 5.691

7.  High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice.

Authors:  A E Dorr; J P Lerch; S Spring; N Kabani; R M Henkelman
Journal:  Neuroimage       Date:  2008-04-08       Impact factor: 6.556

8.  Functional Connectivity within the Primate Extended Amygdala Is Heritable and Associated with Early-Life Anxious Temperament.

Authors:  Andrew S Fox; Jonathan A Oler; Rasmus M Birn; Alexander J Shackman; Andrew L Alexander; Ned H Kalin
Journal:  J Neurosci       Date:  2018-07-30       Impact factor: 6.167

Review 9.  Prediction complements explanation in understanding the developing brain.

Authors:  Monica D Rosenberg; B J Casey; Avram J Holmes
Journal:  Nat Commun       Date:  2018-02-21       Impact factor: 14.919

10.  An Open Resource for Non-human Primate Imaging.

Authors:  Michael P Milham; Lei Ai; Bonhwang Koo; Ting Xu; Céline Amiez; Fabien Balezeau; Mark G Baxter; Erwin L A Blezer; Thomas Brochier; Aihua Chen; Paula L Croxson; Christienne G Damatac; Stanislas Dehaene; Stefan Everling; Damian A Fair; Lazar Fleysher; Winrich Freiwald; Sean Froudist-Walsh; Timothy D Griffiths; Carole Guedj; Fadila Hadj-Bouziane; Suliann Ben Hamed; Noam Harel; Bassem Hiba; Bechir Jarraya; Benjamin Jung; Sabine Kastner; P Christiaan Klink; Sze Chai Kwok; Kevin N Laland; David A Leopold; Patrik Lindenfors; Rogier B Mars; Ravi S Menon; Adam Messinger; Martine Meunier; Kelvin Mok; John H Morrison; Jennifer Nacef; Jamie Nagy; Michael Ortiz Rios; Christopher I Petkov; Mark Pinsk; Colline Poirier; Emmanuel Procyk; Reza Rajimehr; Simon M Reader; Pieter R Roelfsema; David A Rudko; Matthew F S Rushworth; Brian E Russ; Jerome Sallet; Michael Christoph Schmid; Caspar M Schwiedrzik; Jakob Seidlitz; Julien Sein; Amir Shmuel; Elinor L Sullivan; Leslie Ungerleider; Alexander Thiele; Orlin S Todorov; Doris Tsao; Zheng Wang; Charles R E Wilson; Essa Yacoub; Frank Q Ye; Wilbert Zarco; Yong-di Zhou; Daniel S Margulies; Charles E Schroeder
Journal:  Neuron       Date:  2018-09-27       Impact factor: 17.173

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  3 in total

1.  Population receptive fields in nonhuman primates from whole-brain fMRI and large-scale neurophysiology in visual cortex.

Authors:  P Christiaan Klink; Xing Chen; Wim Vanduffel; Pieter R Roelfsema
Journal:  Elife       Date:  2021-11-03       Impact factor: 8.140

2.  An open access resource for functional brain connectivity from fully awake marmosets.

Authors:  David J Schaeffer; L Martyn Klassen; Yuki Hori; Xiaoguang Tian; Diego Szczupak; Cecil Chern-Chyi Yen; Justine C Cléry; Kyle M Gilbert; Joseph S Gati; Ravi S Menon; CiRong Liu; Stefan Everling; Afonso C Silva
Journal:  Neuroimage       Date:  2022-02-22       Impact factor: 7.400

3.  A collaborative resource platform for non-human primate neuroimaging.

Authors:  Adam Messinger; Nikoloz Sirmpilatze; Katja Heuer; Kep Kee Loh; Rogier B Mars; Julien Sein; Ting Xu; Daniel Glen; Benjamin Jung; Jakob Seidlitz; Paul Taylor; Roberto Toro; Eduardo A Garza-Villarreal; Caleb Sponheim; Xindi Wang; R Austin Benn; Bastien Cagna; Rakshit Dadarwal; Henry C Evrard; Pamela Garcia-Saldivar; Steven Giavasis; Renée Hartig; Claude Lepage; Cirong Liu; Piotr Majka; Hugo Merchant; Michael P Milham; Marcello G P Rosa; Jordy Tasserie; Lynn Uhrig; Daniel S Margulies; P Christiaan Klink
Journal:  Neuroimage       Date:  2020-11-20       Impact factor: 7.400

  3 in total

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