Literature DB >> 33135413

A Model for the Solution Structure of Human Fe(II)-Bound Acireductone Dioxygenase and Interactions with the Regulatory Domain of Matrix Metalloproteinase I (MMP-I).

Xinyue Liu1, Abigail Garber2, Julia Ryan2, Aditi Deshpande3, Dagmar Ringe1,3,4, Thomas C Pochapsky1,3,4.   

Abstract

The metalloenzyme acireductone dioxygenase (ARD) shows metal-dependent physical and enzymatic activities depending upon the metal bound in the active site. The Fe(II)-bound enzyme catalyzes the penultimate step of the methionine salvage pathway, converting 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one (acireductone) into formate and the ketoacid precursor of methionine, 2-keto-4-thiomethyl-2-oxobutanoate, using O2 as the oxidant. If Ni(II) is bound, an off-pathway shunt occurs, producing 3-methylthiopropionate, formate, and carbon monoxide from the same acireductone substrate. The solution structure of the Fe(II)-bound human enzyme, HsARD, is described and compared with the structures of Ni-bound forms of the closely related mouse enzyme, MmARD. Potential rationales for the different reactivities of the two isoforms are discussed. The human enzyme has been found to regulate the activity of matrix metalloproteinase I (MMP-I), which is involved in tumor metastasis, by binding the cytoplasmic transmembrane tail peptide of MMP-I. Nuclear magnetic resonance titration of HsARD with the MMP-I tail peptide permits identification of the peptide binding site on HsARD, a cleft anterior to the metal binding site adjacent to a dynamic proline-rich loop.

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Year:  2020        PMID: 33135413      PMCID: PMC7768908          DOI: 10.1021/acs.biochem.0c00724

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  26 in total

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3.  One protein, two enzymes revisited: a structural entropy switch interconverts the two isoforms of acireductone dioxygenase.

Authors:  Tingting Ju; Rachel Beaulieu Goldsmith; Sergio C Chai; Michael J Maroney; Susan Sondej Pochapsky; Thomas C Pochapsky
Journal:  J Mol Biol       Date:  2006-08-26       Impact factor: 5.469

4.  Influence of water on the formation of O2-reactive divalent metal enolate complexes of relevance to acireductone dioxygenases.

Authors:  Katarzyna Grubel; Gajendrasingh K Ingle; Amy L Fuller; Atta M Arif; Lisa M Berreau
Journal:  Dalton Trans       Date:  2011-08-16       Impact factor: 4.390

5.  One protein, two enzymes.

Authors:  Y Dai; P C Wensink; R H Abeles
Journal:  J Biol Chem       Date:  1999-01-15       Impact factor: 5.157

6.  Characterization of metal binding in the active sites of acireductone dioxygenase isoforms from Klebsiella ATCC 8724.

Authors:  Sergio C Chai; Tingting Ju; Marina Dang; Rachel Beaulieu Goldsmith; Michael J Maroney; Thomas C Pochapsky
Journal:  Biochemistry       Date:  2008-02-01       Impact factor: 3.162

7.  A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics.

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Journal:  J Biomol NMR       Date:  2002-10       Impact factor: 2.835

8.  A refined model for the structure of acireductone dioxygenase from Klebsiella ATCC 8724 incorporating residual dipolar couplings.

Authors:  Thomas C Pochapsky; Susan S Pochapsky; Tingting Ju; Chris Hoefler; Jue Liang
Journal:  J Biomol NMR       Date:  2006-02       Impact factor: 2.835

9.  Membrane-type 1 matrix metalloproteinase cytoplasmic tail-binding protein-1 is a new member of the Cupin superfamily. A possible multifunctional protein acting as an invasion suppressor down-regulated in tumors.

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Journal:  J Biol Chem       Date:  2004-01-12       Impact factor: 5.157

10.  Interaction between hepatic membrane type 1 matrix metalloproteinase and acireductone dioxygenase 1 regulates hepatitis C virus infection.

Authors:  M-L Chang; Y-H Huang; J-C Cheng; C-T Yeh
Journal:  J Viral Hepat       Date:  2015-11-05       Impact factor: 3.728

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