| Literature DB >> 33134564 |
Rasha G Mostafa1, Abd El-Aleem Hassan Abd El-Aleem2, Eman Abdella Mahmoud Fouda3, Fardous Rabea Ahmed Taha3, Khaled Mohamed Amin Elzorkany4.
Abstract
BACKGROUND: Chronic kidney disease (CKD) is a worldwide public health problem due to its increasing prevalence worldwide. Endoplasmic reticulum (ER) stress has been shown to play a role in the pathogenesis of various renal diseases in humans. It leads to the activation of the unfolded protein response (UPR) which triggers three known trans membrane sensors in the ER: activating transcription factor 6 (ATF6), inositol-requiring enzyme I (IRE1), and PKR (double-stranded RNA-dependent protein kinase)-like ER protein kinase (PERK). The activation of these signal transduction pathways can result in cell death, inflammation, and fibrosis in the context of CKD.Entities:
Keywords: CDK; ER stress; IRE1 and ATF6 gene expressions; PERK
Year: 2020 PMID: 33134564 PMCID: PMC7588702 DOI: 10.1016/j.bbrep.2020.100829
Source DB: PubMed Journal: Biochem Biophys Rep ISSN: 2405-5808
Fig. 11The amplification plot of gene expressions.
Mean distribution of Blood pressure and laboratory investigation among the studied groups.
| Groups | Kruskal-Wallis (P value) | Post hoc value | |||
|---|---|---|---|---|---|
| I (N = 25) | II (N = 25) | III (N = 30) | |||
| Mean ± SD | Mean ± SD | Mean ± SD | |||
| 182.0 ± 16.83 | 113.80 ± 6.96 | 116.50 ± 5.43 | |||
| 103.60 ± 9.07 | 78.20 ± 4.97 | 80.16 ± 3.34 | |||
| 66.64 ± 34.95 | 71.08 ± 24.01 | 32.43 ± 6.82 | |||
| 8.02 ± 1.64 | 7.36 ± 1.27 | 1.01 ± 0.09 | |||
| 9.24 ± 12.06 | 27.56 ± 12.60 | 84.26 ± 7.0 | |||
| 24.60 ± 17.06 | 20.92 ± 16.25 | 23.86 ± 19.96 | |||
| 18.76 ± 13.31 | 12.19 ± 5.54 | 13.74 ± 6.37 | |||
| 207.40 ± 49.64 | 138.08 ± 9.63 | 138.80 ± 9.48 | |||
| 223.16 ± 35.82 | 177.60 ± 18.11 | 178.23 ± 11.22 | |||
| 38.16 ± 4.89 | 36.28 ± 4.76 | 58.53 ± 6.31 | |||
| 143.52 ± 40.0 | 113.70 ± 17.61 | 91.94 ± 15.39 | |||
| 100.16 ± 15.6 | 75.04 ± 12.54 | 34.6 ± 8.81 | |||
P1= I vs II P2= I vs III P3= II vs III.
Mean distribution of relative quantitation (RQ) for gene expression of PERK, ATF6 and IRE1 among the studied groups.
| Groups | Kruskal-Wallis (P value) | Post hoc value | |||
|---|---|---|---|---|---|
| I (N = 25) | II (N = 25) | III (N = 30) | |||
| Mean ± SD | Mean ± SD | Mean ± SD | |||
| 111.48 ± 49.36 | 36.08 ± 17.61 | 1.21 ± 0.64 | |||
| 24.16 ± 7.86 | 8.69 ± 2.06 | 0.55 ± 0.63 | |||
| 9.10 ± 2.32 | 3.72 ± 1.07 | 0.88 ± 0.25 | |||
*significant.
Fig. 22Mean distribution of gene expression of PERK, among the studied groups.
Fig. 33Mean distribution of gene expression of ATF6 and IRE1 among the studied groups.
Validity of PERK, ATF6 and IRE1 gene expressions between the studied groups (I vs. II).
| Group | Gene | AUC | Cutoff point | Sensitivity % | Specificity % | Accuracy % | PPV % | NPV % |
|---|---|---|---|---|---|---|---|---|
| 0.96 | ≥52 | 100.0 | 76.0 | 88.0 | 80.6 | 100.0 | ||
| 1.0 | ≥12.70 | 100.0 | 100.0 | 100.0 | 100.0 | 100.0 | ||
| 0.97 | ≥4.99 | 100.0 | 80.0 | 90.0 | 83.0 | 100.0 |
*significant.
Fig. 44ROC curve for PERK, ATF6 and IRE1 gene expressions between the studied groups (I vs. II).
Correlation of PERK gene expressions and other variables among the studied groups.
| Variables | Groups | |||||
|---|---|---|---|---|---|---|
| I | II | III | ||||
| PERK gene expressions | ||||||
| 0.135 | 0.520 | 0.016 | 0.941 | −0.275 | 0.142 | |
| −0.022 | 0.916 | 0.213 | 0.307 | 0.132 | 0.488 | |
| −0.001 | 0.998 | 0.242 | 0.244 | −0.031 | 0.872 | |
| 0.296 | 0.151 | 0.071 | 0.737 | |||
| 0.383 | 0.059 | 0.024 | 0.909 | 0.104 | 0.584 | |
| −0.007 | 0.973 | −0.095 | 0.616 | |||
| −0.083 | 0.0695 | −0.102 | 0.628 | 0.087 | 0.674 | |
| −0.085 | 0.685 | −0.433 | 0.030 | −0.032 | 0.865 | |
| −0.176 | 0.400 | −0.246 | 0.236 | 0.188 | 0.320 | |
| 0.116 | 0.581 | −0.449 | 0.024 | −0.277 | 0.138 | |
| 0.454 | 0.023 | −0.253 | 0.223 | 0.157 | 0.407 | |
| 0.127 | 0.545 | −0.368 | 0.070 | −0.350 | 0.058 | |
| 0.1394 | 0.535 | 0.321 | 0.112 | |||
| 0.142 | 0.498 | 0.028 | 0.883 | |||
| 0.018 | 0.931 | 0.184 | 0.378 | |||
*significant.
Correlation of ATF6 gene expressions and other variables among the studied groups.
| Variables | Groups | |||||
|---|---|---|---|---|---|---|
| I | II | III | ||||
| ATF6 gene expressions | ||||||
| 0.240 | 0.248 | 0.025 | 0.905 | 0.070 | 0.713 | |
| −0.042 | 0.841 | −0.273 | 0.186 | 0.210 | 0.265 | |
| 0.023 | 0.912 | −0.210 | 0.314 | −0.112 | 0.557 | |
| 0.126 | 0.550 | −0.146 | 0.487 | −0.229 | 0.223 | |
| 0.271 | 0.190 | 0.044 | 0.836 | 0.251 | 0.180 | |
| −0.351 | 0.085 | −0.185 | 0.350 | 0.059 | 0.757 | |
| 0.002 | 0.992 | 0.215 | 0.302 | −0.326 | 0.079 | |
| −0.015 | 0.943 | 0.131 | 0.533 | −0.072 | 0.706 | |
| 0.015 | 0.943 | −0.293 | 0.155 | −0.247 | 0.188 | |
| 0.269 | 0.194 | 0.076 | 0.716 | 0.068 | 0.721 | |
| 0.197 | 0.346 | 0.249 | 0.185 | |||
| 0.207 | 0.320 | 0.023 | 0.915 | −0.044 | 0.816 | |
| 0.227 | 0.275 | 0.3279 | 0.093 | |||
| −0.066 | 0.753 | −0.098 | 0.642 | −0.107 | 0.572 | |
6Correlation of IRE1 gene expressions and other variables among the studied groups.
| Variables | Groups | |||||
|---|---|---|---|---|---|---|
| I | II | III | ||||
| IRE1 gene expressions | ||||||
| −0.071 | 0.738 | −0.353 | 0.084 | −0.021 | 0.913 | |
| −0.388 | 0.055 | −0.020 | 0.925 | −0.071 | 0.0709 | |
| −0.100 | 0.635 | 0.059 | 0.781 | −0.027 | 0.889 | |
| 0.201 | 0.336 | −0.216 | 0.299 | 0.152 | 0.423 | |
| −0.159 | 0.447 | 0.051 | 0.810 | 0.288 | 0.122 | |
| 0.061 | 0.774 | 0.291 | 0.159 | −0.201 | 0.287 | |
| 0.168 | 0.423 | −0.270 | 0.192 | −0.012 | 0.945 | |
| 0.090 | 0.668 | −0.226 | 0.276 | 0.028 | 0.883 | |
| −0.007 | 0.973 | −0.003 | 0.989 | 253 | 0.177 | |
| −0.112 | 0.594 | −0.144 | 0.493 | −0.001 | 0.998 | |
| −0.103 | 0.625 | −0.370 | 0.069 | −0.128 | 0.502 | |
| −0.059 | 0.780 | −0.015 | 0.942 | 0.064 | 0.736 | |
| −0.2139 | 0.317 | −0.099 | 0.637 | 0.0319 | 0.831 | |