L Azzi1, V Maurino1, A Baj2, M Dani1, A d'Aiuto1, M Fasano3, M Lualdi3, F Sessa4, T Alberio3. 1. Unit of Oral Medicine and Pathology, ASST dei Sette Laghi-Ospedale di Circolo e Fondazione Macchi, Department of Medicine and Surgery, University of Insubria, Varese, Italy. 2. Laboratory of Clinical Microbiology, ASST dei Sette Laghi-Ospedale di Circolo e Fondazione Macchi, Department of Medicine and Surgery, University of Insubria, Varese, Italy. 3. Laboratory of Biochemistry and Functional Proteomics, Department of Science and High Technology, Busto Arsizio (VA), Italy. 4. Unit of Pathology, ASST dei Sette Laghi-Ospedale di Circolo e Fondazione Macchi, Department of Medicine and Surgery, University of Insubria, Varese, Italy.
Abstract
The diagnosis of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection relies on the detection of viral RNA by real-time reverse transcription polymerase chain reaction (rRT-PCR) performed with respiratory specimens, especially nasopharyngeal swabs. However, this procedure requires specialized medical personnel, centralized laboratory facilities, and time to provide results (from several hours up to 1 d). In addition, there is a non-negligible risk of viral transmission for the operator who performs the procedure. For these reasons, several studies have suggested the use of other body fluids, including saliva, for the detection of SARS-CoV-2. The use of saliva as a diagnostic specimen has numerous advantages: it is easily self-collected by the patient with almost no discomfort, it does not require specialized health care personnel for its management, and it reduces the risks for the operator. In the past few months, several scientific papers, media, and companies have announced the development of new salivary tests to detect SARS-CoV-2 infection. Posterior oropharyngeal saliva should be distinguished from oral saliva, since the former is a part of respiratory secretions, while the latter is produced by the salivary glands, which are outside the respiratory tract. Saliva can be analyzed through standard (rRT-PCR) or rapid molecular biology tests (direct rRT-PCR without extraction), although, in a hospital setting, these procedures may be performed only in addition to nasopharyngeal swabs to minimize the incidence of false-negative results. Conversely, the promising role of saliva in the diagnosis of SARS-CoV-2 infection is highlighted by the emergence of point-of-care technologies and, most important, point-of-need devices. Indeed, these devices can be directly used in workplaces, airports, schools, cinemas, and shopping centers. An example is the recently described Rapid Salivary Test, an antigen test based on the lateral flow assay, which detects the presence of the virus by identifying the spike protein in the saliva within a few minutes.
The diagnosis of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection relies on the detection of viral RNA by real-time reverse transcription polymerase chain reaction (rRT-PCR) performed with respiratory specimens, especially nasopharyngeal swabs. However, this procedure requires specialized medical personnel, centralized laboratory facilities, and time to provide results (from several hours up to 1 d). In addition, there is a non-negligible risk of viral transmission for the operator who performs the procedure. For these reasons, several studies have suggested the use of other body fluids, including saliva, for the detection of SARS-CoV-2. The use of saliva as a diagnostic specimen has numerous advantages: it is easily self-collected by the patient with almost no discomfort, it does not require specialized health care personnel for its management, and it reduces the risks for the operator. In the past few months, several scientific papers, media, and companies have announced the development of new salivary tests to detect SARS-CoV-2 infection. Posterior oropharyngeal saliva should be distinguished from oral saliva, since the former is a part of respiratory secretions, while the latter is produced by the salivary glands, which are outside the respiratory tract. Saliva can be analyzed through standard (rRT-PCR) or rapid molecular biology tests (direct rRT-PCR without extraction), although, in a hospital setting, these procedures may be performed only in addition to nasopharyngeal swabs to minimize the incidence of false-negative results. Conversely, the promising role of saliva in the diagnosis of SARS-CoV-2 infection is highlighted by the emergence of point-of-care technologies and, most important, point-of-need devices. Indeed, these devices can be directly used in workplaces, airports, schools, cinemas, and shopping centers. An example is the recently described Rapid Salivary Test, an antigen test based on the lateral flow assay, which detects the presence of the virus by identifying the spike protein in the saliva within a few minutes.
Ten months have passed since the Chinese health authorities informed the World
Health Organization (WHO) about the outbreak of a novel
coronavirus-associated pneumonia in the province of Hubei and the city of
Wuhan (Zhu, Zhang, et
al. 2020). This novel coronavirus was soon named Severe Acute
Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) because of its close
relationship to the virus responsible for the 2003 SARS epidemic (SARS-CoV).
The disease caused by this new infectious agent was called Coronavirus
Disease 2019 (COVID-19). Despite the fact that SARS-CoV-2 shares 80%
sequence similarity with SARS-CoV, its contagiousness appears to be much
higher, as demonstrated by the worldwide diffusion of the infection, with
over 40,000,000 cases officially diagnosed and 1,128,000 deaths by the end
of October 2020 (World
Health Organization 2020).At the start of the pandemic, a diagnostic protocol was recommended by the WHO.
Based on the experience from other respiratory infectious diseases,
including SARS in 2003, detection of viral RNA by real-time reverse
transcription polymerase chain reaction (rRT-PCR) in respiratory specimens
was recognized as the reference standard for the diagnosis of SARS-CoV-2infection (Corman et al.
2020). Among different respiratory specimens, the
nasopharyngeal swab (NPS) was recommended as the first choice for testing in
terms of sensitivity.However, this technique entails the main limitation of requiring several hours
up to 1 d to generate results, thus reducing the possibility of rapid
diagnoses made directly on the field and its deployment in a mass screening
program. During the peak of the COVID-19 epidemic, the crowding of centers
designated to analyze the specimens caused interruption of many other
diagnostic procedures, which had a major impact on the delivery of essential
health services for chronic illnesses. Furthermore, the collection of
respiratory specimens requires specialized health care personnel and is
associated with a nonnegligible risk of viral transmission. The procedure
itself may be associated with pharynx irritation, sneezing, and cough,
increasing the risk for the operator who is in contact with the patient
(Ng et al.
2020). Finally, the sensitivity of testing using this specimen
may vary significantly depending on the interval between exposure and the
sampling procedure (Wiersinga et al. 2020).For these reasons, several studies have suggested detection of SARS-CoV-2 using
other body fluids such as urine, stool, tears, and saliva (Sun et al. 2020).
Among these body fluids, saliva has attracted both scientific attention and
public approval. It is now regarded as an alternative or complementary
sample to the nasopharyngeal swab. As a proof of this, the Food and Drug
Administration (FDA) recently approved the Emergency Use Authorization of
several saliva-based tests, such as those proposed by Rutgers’ RUCDR
Infinite Biologics and Yale School of Public Health. This stance is
consistent with the finding that salivary droplets represent the main source
of human-to-human transmission of SARS-CoV-2 infection (Han and Ivanovski
2020). The use of saliva as a diagnostic specimen offers
numerous advantages: it is easily self-collected by the patient with almost
no discomfort, it does not require specialized health care personnel for its
management, and it reduces the risks for the operator. As a result, in the
past few months, several scientific papers, media, and companies have
reported the development of new salivary tests to detect SARS-CoV-2infection. The aim of this review is to provide an update on this topic,
synthesizing the latest research and comparing the different methods and
techniques developed for the salivary diagnosis of COVID-19.
The Detection of SARS-CoV-2 in Saliva
The idea that saliva droplets could represent an important source of infection
and a suitable sample for diagnosis was highlighted in 2003 during the SARS
outbreak (Wang et al.
2004). Analogous considerations were made for the Middle
Eastern respiratory syndrome coronavirus (MERS-CoV) outbreak (Adhikari et al.
2019). Similarly, the eruption of the new pandemic and its
severe course have drawn the attention of researchers to these issues.
Within the family of coronaviruses, SARS-CoV-2 has the highest basic
reproductive rate (R0). Indeed, the viral load for SARS-CoV peaks
6 to 11 d after the symptom onset, while the load for SARS-CoV-2 peaks at
the onset of symptoms and then declines. This feature highlights the role of
presymptomatic individuals in the transmission of the infection (Petersen et al.
2020), as well as the role of asymptomatic people (Lavezzo et al.
2020).
Posterior Oropharyngeal Saliva
Detection of SARS-CoV-2 in the saliva by rRT-PCR was originally described
by To and coworkers (To, Tsang, Yip, et al.
2020). In their study, the authors analyzed 23 COVID-19patients with different severities of illness and reported that 87% of
them had detectable viral RNA in their saliva (To, Tsang, Leung, et al.
2020). This group has also previously underlined the role
played by saliva in the diagnosis of respiratory infections, such as
those caused by influenza or other coronaviruses (To et al.
2017). The saliva collected in these studies was defined
as posterior oropharyngeal saliva. This means that
the patient expectorates pharyngeal secretions, which belong to
respiratory secretions, and not only oral saliva produced by the
salivary glands, which are outside the respiratory tract (Fig. 1).
Figure 1.
Different salivary samples. Posterior oropharyngeal saliva is
the secretion produced when coughing or clearing one’s
throat, and it belongs to the respiratory secretions,
admixing secretions from both the upper (nasopharynx) and
lower (bronchi, lungs) airways (number 1 in the circle).
In contrast, oral saliva is produced by the salivary
glands and does not belong to the group of respiratory
specimens (number 2 in the circle). However, a clear
distinction between these 2 kinds of samples is not
feasible and does not fall within the aim of laboratory
clinical diagnosis of Coronavirus Disease 2019. The saliva
produced when coughing will contain oral saliva, while a
small quantity of oropharyngeal secretions may be present
in oral saliva.
Different salivary samples. Posterior oropharyngeal saliva is
the secretion produced when coughing or clearing one’s
throat, and it belongs to the respiratory secretions,
admixing secretions from both the upper (nasopharynx) and
lower (bronchi, lungs) airways (number 1 in the circle).
In contrast, oral saliva is produced by the salivary
glands and does not belong to the group of respiratory
specimens (number 2 in the circle). However, a clear
distinction between these 2 kinds of samples is not
feasible and does not fall within the aim of laboratory
clinical diagnosis of Coronavirus Disease 2019. The saliva
produced when coughing will contain oral saliva, while a
small quantity of oropharyngeal secretions may be present
in oral saliva.The use of posterior oropharyngeal saliva as a specimen to detect
SARS-CoV-2 has also been described in other studies, which emphasized
the fact that such samples might contain both bronchopulmonary and
nasopharyngeal secretions. Notably, these studies were conducted in
the Hong Kong Special Administrative Region, where health authorities
conducted a surveillance campaign by collecting posterior
oropharyngeal samples at locations such as airports.
Oral Saliva
Our group was the first to report the detection of SARS-CoV-2 in oral
saliva by rRT-PCR in April 2020 (Azzi, Carcano, Gianfagna, et al.
2020). However, in our study, we recruited only
hospitalized COVID-19patients affected by a severe form of the
disease. In the following weeks, other studies investigated the role
of saliva as a diagnostic tool by also recruiting symptomatic patients
with a milder form of the disease (Becker et al. 2020; Caulley et al.
2020; Iwasaki et al. 2020; Jamal et al. 2020; Kim, Lee, et al.
2020; McCormick-Baw et al. 2020; Migueres et al. 2020; Nagura-Ikeda et
al. 2020; Pasomsub et al. 2020; Williams et al.
2020; Wyllie et al. 2020). Most of these studies reported the
results of analyses conducted with small- and medium-sized patient
cohorts (i.e., 200 subjects or fewer), although studies with larger
cohorts (i.e., about 1,000 subjects) have been recently published
(Caulley et
al. 2020; Zhu, Guo, et al. 2020).Remarkably, several of these studies reported positive salivary samples
concurrently with negative NPSs. The reasons underlying this finding
remain unclear and could be related to several factors, including
incorrect performance of the NPS procedure or different patterns of
the viral and clinical course of the infection. The published data
suggest that a combination of salivary and respiratory specimens in a
hospital setting may increase the overall sensitivity and reduce the
number of false-negative results.Nevertheless, it is worrisome that more than one report, including one
from our group, showed that some COVID-19patients may have a negative
NPS while their salivary sample is and remains positive when tested by
rRT-PCR (Azzi,
Carcano, Dalla Gasperina, et al. 2020). This finding
raises the question of whether all the patients who show 2 consecutive
negative tests with NPSs are actually not contagious.Figure 2
summarizes the different diagnostic methods that can be used for
detecting SARS-CoV-2 in saliva.
Figure 2.
Coronavirus Disease 2019 (COVID-19) salivary diagnosis
procedures. Saliva is collected with the drooling
technique, avoiding coughing or expectoration.
(a) Real-time reverse transcription
polymerase chain reaction (rRT-PCR): this test represents
the reference standard for COVID-19 diagnosis and is
usually performed on respiratory specimens, but it can be
used on saliva. (b) Direct rRT-PCR allows
quicker diagnosis because RNA isolation is avoided.
(c) Colorimetric reverse transcription
loop-mediated isothermal amplification (RT-LAMP) is a
point-of-care technology that allows rapid detection of
viral RNA by combining LAMP technology with a colorimetric
assay. (d) Antibody detection in saliva can
be performed both with enzyme-linked immunosorbent assay
(ELISA) or lateral flow assay. (e) Rapid
salivary test is an antigen test based on the lateral flow
assay, which shows great promise for mass screening.
Coronavirus Disease 2019 (COVID-19) salivary diagnosis
procedures. Saliva is collected with the drooling
technique, avoiding coughing or expectoration.
(a) Real-time reverse transcription
polymerase chain reaction (rRT-PCR): this test represents
the reference standard for COVID-19 diagnosis and is
usually performed on respiratory specimens, but it can be
used on saliva. (b) Direct rRT-PCR allows
quicker diagnosis because RNA isolation is avoided.
(c) Colorimetric reverse transcription
loop-mediated isothermal amplification (RT-LAMP) is a
point-of-care technology that allows rapid detection of
viral RNA by combining LAMP technology with a colorimetric
assay. (d) Antibody detection in saliva can
be performed both with enzyme-linked immunosorbent assay
(ELISA) or lateral flow assay. (e) Rapid
salivary test is an antigen test based on the lateral flow
assay, which shows great promise for mass screening.
Molecular-Based Tests for the Detection of SARS-CoV-2 in Saliva
Molecular-based diagnostics inform clinicians of the presence of SARS-CoV-2 by
identifying its genomic material, that is, the viral RNA, in the analyzed
sample. These procedures represent the reference standard for the diagnosis
of viral infections. They require dedicated equipment, that is, thermal
cyclers, expensive reagents, specialized personnel, and laboratory
infrastructures. Therefore, they are suitable within the context of a
hospital or a tertiary referral center.
rRT-PCR
In the SARS-CoV-2 outbreak, the use of rRT-PCR as the reference standard
diagnostic procedure was drawn from the experience gained with
SARS-CoV in 2003. The diagnostic strategy encompasses the use of
rRT-PCR assays performing the nucleic acid amplification test (NAAT)
by targeting 1 or more genes in the SARS-CoV-2 genome. This procedure
typically consists of RNA isolation, purification, reverse
transcription to complementary DNA (cDNA), amplification, detection,
and quantification by the incorporation of a fluorescent probe.A validated protocol endorsed by the WHO entails a first-line screening
assay with amplification of the envelope
(E) gene, followed by a confirmatory assay with
amplification of the RNA-dependent RNA polymerase (RdRp) region of the
Orf1b gene, and then an additional potential
confirmatory assay by amplification of the
nucleocapsid (N) gene (Fig. 3).
Another recognized protocol has been proposed by the US Centers for
Disease Control and Prevention (CDC) and encompasses the use of
2019-nCoV N1 and N2 primer-probes sets along with the
RNAse
P gene as an internal control. These procedures are
described as techniques with the highest sensitivity in viral RNA
detection. However, they have shown several limitations for deployment
in mass screening programs since the beginning of the pandemic (Lippi, Simundic,
et al. 2020). The most important limitation is the time
required for the diagnosis (several hours up to 1 d) and the crowding
of centers designated to analyze specimens.
Figure 3.
Real-time reverse transcription polymerase chain reaction
(rRT-PCR) of a salivary positive sample. (a)
Schematic illustration of an rRT-PCR result. The
amplification curve for positive samples follows a sigmoid
trend (i.e., the relative fluorescence intensity
increases, with an exponential middle tract, until a
plateau phase). No increase in fluorescence is observed
when the sample is negative. The threshold is placed so to
intersect the amplification curves at the beginning of the
exponential tract. The cycle threshold (Ct) represents the
cycle number at which the amplification curve intersects
the threshold line and is an indicator of the quantity of
the amplified target gene. The lower the Ct value, the
higher the amount of the target gene and then the viral
load. (b) An example of amplification curves
in log scale for a salivary sample that
tested positive for the presence of all 3 genes associated
with SARS-CoV-2 (E, N, and
RdRp). The internal control (IC),
whose viral load is known, is used as comparison to
quantify the viral load of the sample.
Real-time reverse transcription polymerase chain reaction
(rRT-PCR) of a salivary positive sample. (a)
Schematic illustration of an rRT-PCR result. The
amplification curve for positive samples follows a sigmoid
trend (i.e., the relative fluorescence intensity
increases, with an exponential middle tract, until a
plateau phase). No increase in fluorescence is observed
when the sample is negative. The threshold is placed so to
intersect the amplification curves at the beginning of the
exponential tract. The cycle threshold (Ct) represents the
cycle number at which the amplification curve intersects
the threshold line and is an indicator of the quantity of
the amplified target gene. The lower the Ct value, the
higher the amount of the target gene and then the viral
load. (b) An example of amplification curves
in log scale for a salivary sample that
tested positive for the presence of all 3 genes associated
with SARS-CoV-2 (E, N, and
RdRp). The internal control (IC),
whose viral load is known, is used as comparison to
quantify the viral load of the sample.Consequently, some companies have developed new diagnostic testing
solutions such as a more rapid PCR assay, which allows faster
assessment of the infection in central facilities dedicated to
COVID-19 diagnosis (Bordi et al. 2020). These methods allow more rapid
diagnosis by direct rRT-PCR without RNA extraction. Similarly, other
companies have developed rRT-PCR devices that include fully automated
commercial systems that can shorten the bench time per sample by
nearly 90%, reducing the possibility of mistakes during specimen
handling and allowing analysis of a larger number of patients in a
shorter time frame (Chen et al. 2020; Lippi, Mattiuzzi, et al.
2020; Nagura-Ikeda et al. 2020).Another strategy that has been recently introduced to address the reduced
resources in low-prevalence areas is sample pooling. The saliva pool
of either 5 of 10 samples allows the detection of viral RNA in the
pool, and further individual sample testing is performed only in pools
that tested positive by rRT-PCR (Watkins et al. 2020).
Diagnostic Accuracy of Salivary rRT-PCR
In a group of studies, the detection of viral RNA in saliva was
compared with that of nasopharyngeal and/or oropharyngeal swabs
(OPSs) performed on the same day of the salivary collection
(Table).
Table.
Diagnostic Accuracy Values of Real-Time Reverse
Transcription Polymerase Chain Reaction (rRT-PCR)
Salivary Analysis Reported in the Literature.
Different collection kits, probes, and
laboratories
McCormick-Baw et al.
2020, May
Emergency Department and COVID-19 hospitalized
patients (not severe)
156
NPS
E and N2
47/49; 95.92%
105/106; 99.06%
97.92
98.13
Pasomsub et al.
2020, May
Symptomatic individuals
200
NPS and OPS
N, ORF1ab
16/19; 84.21%
179/181; 98.9%
88.9[a]
98.4
Iwasaki et al.
2020, June
Suspicious subjects and COVID-19 patients
(mild-moderate)
76 (10 + 66)
NPS
Taqman probe 2019-nCoV 2.9.1 Japan
8/9; 88.89%
66/67; 98.51%
88.89
98.51
Jamal et al.
2020, June
COVID-19 hospitalized patients
91
NPS
E, N, RdRp
44/64; 68.75%
19/27; 70.37%
69.84
48.72
Frozen samples
Zhu et al.
2020, June
12 independent cohorts (various degrees)
944
NPS or OPS
not specified
382/442; 86.43%
487/502; 97.01%
96.22
89.03
Nagura-Ikeda et al.
2020, July
Laboratory-confirmed COVID-19
103 (88 symptomatic and 15 asymptomatic)
NPS or OPS
N1 and N2
84/103; 81.6%
n/a
n/a
n/a
Frozen samples; respiratory swabs and salivary
collection not at the same day
Caulley et al.
2020, August
High risk asymptomatic and mildly symptomatic
individuals
1939
NPS or OPS
E gene
34/56; 60.71%
1869/1883; 99.26%
70.83
98.84
Viricidal fluid in the collection kit; 2
laboratories
Kim et al.
2020, August
COVID-19 hospitalized patients (asymptomatic
and symptomatic, various degrees)
15[b]
NPS or OPS
E, RdRp
n/a
n/a
n/a
n/a
Migueres et al.
2020, August
Hospitalized and ambulatory patients
(symptomatic and asymptomatic)
123
NPS
RdRp
34/41; 82.93%
79/82; 96.34%
91.89
91.86
Wyllie et al.
2020, August
COVID-19 hospitalized patients (severe);
asymptomatic health care workers
70495
NPS
N1 and N2
n/a
n/a
n/a
n/a
Sensitivity of saliva 1-5 days: 81%
Sensitivity of NPS 1-5 days: 71%
CDC, Centers for Disease Control and Prevention;
COVID-19, Coronavirus Disease 2019; n/a, not
applicable; NPS, nasopharyngeal swab; OPS,
oropharyngeal/throat swab; RdRp, RNA-dependent RNA
polymerase.
The 2 “false positives” later reported
anosmia.
Evaluation on more than 1 sample per patient;
only without sputum.
Diagnostic Accuracy Values of Real-Time Reverse
Transcription Polymerase Chain Reaction (rRT-PCR)
Salivary Analysis Reported in the Literature.CDC, Centers for Disease Control and Prevention;
COVID-19, Coronavirus Disease 2019; n/a, not
applicable; NPS, nasopharyngeal swab; OPS,
oropharyngeal/throat swab; RdRp, RNA-dependent RNA
polymerase.The 2 “false positives” later reported
anosmia.Evaluation on more than 1 sample per patient;
only without sputum.Some of these studies compared the sensitivity of both the salivary
and respiratory samples in detecting the presence of SARS-CoV-2infection in the analyzed patients. The results were
heterogeneous, with saliva showing a lower diagnostic accuracy
than the NPS/OPS (i.e., saliva: 55% to 72% vs. NPS/OPS: 82% to
98%) in some cases. In other cases, the values for saliva were
equal to or even higher than those recorded with the NPS/OPS
(i.e., saliva: 82% to 96% vs. NPS/OPS: 93% to 98%). When
comparing saliva with NPS as a reference standard, sensitivity
values ranged from 60% to 96%, with the majority of the studies
showing a mean sensitivity of 85%. The specificity values
settled over 90% in the majority of cases. However, the
“false-positive” subjects were often symptomatic patients with
clinical and/or radiological signs of COVID-19 and a negative
NPS. It is ascertained that the nasopharyngeal swab is
associated with a false-negative rate of approximately 30% after
the onset of symptoms (Kucirka et al. 2020),
and this feature could have introduced a misclassification bias
in the diagnostic accuracy of salivary analysis. Within this
framework, a concordance analysis between the 2 samples (k Cohen
statistics) is more appropriate to verify the utility of saliva
in the molecular diagnostic workflow, and further studies should
consider this issue.Most studies on the detection of viral RNA through saliva have been
conducted by recruiting COVID-19patients or individuals with
suspicious symptoms, while only few studies recruited cohorts of
asymptomatic patients. The results related to this group were
discordant. Although some studies reported a lower sensitivity
of saliva in a group of asymptomatic individuals (Caulley et
al. 2020; Nagura-Ikeda et al.
2020), other researchers, on the contrary, have
highlighted the clinical utility of this oral fluid in detecting
SARS-CoV-2 in this population group (Chau et al. 2020;
Migueres et al. 2020). For instance, a recent
study identified asymptomatic carriers among NPS-negative
healthcare workers just through saliva (Wyllie et al. 2020).
Thus, it can be concluded that salivary rRT-PCR provides
relevant, reliable data that can be used in addition to the
reference standard (i.e., NPS) to detect false-negative cases by
respiratory swab analysis, thereby increasing the overall
sensitivity of standard molecular-based testing (Hanson et
al. 2020).With respect to direct rRT-PCR, 2 groups tested this more rapid
procedure on salivary samples and noted a sensitivity that was
only slightly lower than the sensitivity shown by the standard
protocol with RNA extraction (Nagura-Ikeda et al.
2020) or even superimposable (Fukumoto et al.
2020). These findings demonstrate that the presence of
RNases in saliva does not impair such an alternate protocol,
which bypasses the classic RNA isolation and purification to
reduce the risk of human error during this phase.Finally, the time required for performing this procedure ranged
between 30 and 60 min, ensuring more rapid diagnosis (Chen et al.
2020).
Point-of-Care Technology for Salivary Diagnosis of COVID-19
Point-of-care testing (POCT) is a medical diagnostic test performed at the time
and place of patient care and assistance, that is, the medical office or
screening checkpoint. This procedure does not require a centralized
laboratory setting, avoiding thus overcrowding and expensive transport
media, and it usually provides results within 30 to 60 min.
The reverse transcription loop-mediated isothermal amplification
(RT-LAMP) technique has attracted attention for the diagnosis of
several infectious diseases during the past decade, such as those
caused by the Ebola and Zika viruses (Sabalza et al. 2018).
RT-LAMP is a 1-step nucleic acid amplification method that is used to
diagnose infectious diseases caused by bacteria or viruses. The
commonly used PCR method described above relies on thermal cycling
(i.e., cycles of heating and cooling) to facilitate DNA double-helix
denaturation and amplification. In contrast, RT-LAMP does not require
these cycles and is performed at a constant temperature between 60°C
and 65°C. Similar to RT-PCR, RT-LAMP is preceded by reverse
transcription for the synthesis of cDNA from RNA sequences.
Subsequently, cDNA is amplified using DNA polymerase. Therefore,
RT-LAMP is very effective in detecting viruses with an RNA genome.Several groups in the world have been studying the possibility of
applying RT-LAMP technology in combination with a colorimetric
qualitative analysis to realize a point-of-care technology to be used
in medical practice or in low-income countries, which suffer from a
lack of a centralized laboratory network facilities. This technology
has also been tested on salivary samples collected from COVID-19patients without an RNA extraction step. Results were available after
30 min and assessed on the basis of the sample color change when the
viral RNA was present (Lalli et al. 2020).Salivary RT-LAMP offers several advantages for point-of-care diagnostic
challenges. First, the salivary sample is self-collected by the
patient and does not require RNA extraction. Second, it provides
easily interpretable results within 1 h, and it does not require any
laboratory devices or complex technologies, apart from a heat block
(Lamb et al.
2020; Wei et al. 2020).For example, EasyCOV (SkiCell and Sys2Diag/CNRS) is a colorimetric
RT-LAMP assay designed for salivary analysis. The results can be read
by observing the color of the sample inside the test tube. A color
change from orange to yellow indicates that the sample is positive and
SARS-CoV-2 is present (L’Helgouach et al.
2020).
Diagnostic Performance of Salivary RT-LAMP Assay
The sensitivity of RT-LAMP for SARS-CoV-2 using upper and lower
respiratory tract specimens has been reported to be equivalent
to that of rRT-PCR, showing a 95% agreement with rRT-PCR (Lamb et al.
2020). However, 1 study highlighted that the
sensitivity of RT-LAMP in detecting SARS-CoV-2 was lower than
that of the classic rRT-PCR test for COVID-19 in saliva
specimens (RT-LAMP: 70.9% vs. rRT-PCR: 81.6%); thus, more
studies are needed (Nagura-Ikeda et al.
2020).
Other Point-of-Care Technologies under Development
Other groups are developing new technological solutions for point-of-care
molecular-based diagnostics. Specific High-sensitivity Enzymatic
Reporter UnLOCKing (SHERLOCK) technology combines viral RNA
amplification with LAMP and Clustered Regularly Interspaced Short
Palindromic Repeat (CRISPR)–mediated detection. This procedure
(STOPCovid) is simple to perform, and the results can be visualized
with lateral flow strips in a point-of-care setting. A preliminary
report showed a successful diagnosis in 12 positive and 5 negative
COVID-19patients (Joung et al. 2020). The test returns results in 40 to
70 min.DNA nanoscaffold hybrid chain reaction (DNHCR)–based nucleic acid assay
strategy is an innovative technology that can provide results for
salivary specimens within 10 min (Jiao et al. 2020).
Single-strand recombinase polymerase amplification (ssRPA) allows
rapid amplification of double-stranded DNA (dsDNA), conversion to
single-stranded DNA (ssDNA), and sequence-specific,
hybridization-based readout with a lateral flow dipstick. Initial
experimentation of the proof of concept seems to be associated with a
very high sensitivity in viral detection (Kim, Yaseen, et al. 2020).
Finally, Raman spectroscopy, a technology that is based on the
principle of inelastic scattering of light, has been tested for the
detection of SARS-CoV-2 viral RNA after it yielded interesting
findings for other viral infections (92.5% sensitivity and 88.8%
specificity) (Desai et al. 2020).
Antibody Testing in the Saliva
Active infection can be detected by molecular-based testing for viral RNA, but
this approach cannot be used for seroprevalence investigations. Antibody
testing on blood samples (or saliva) is useful for determining historic
exposure to the virus and may provide insight into the immunological status
of the individual (Faustini et al. 2020). It can be performed both by lateral
flow assay (LFA) directly in the field or by enzyme-linked immunosorbent
assay (ELISA) and/or chemiluminiscent assay technologies in a centralized
laboratory.
Results of Salivary Antibody Testing
Only a few reports have investigated saliva as a specimen to detect
antibodies directed against SARS-CoV-2. In one of these studies,
antispike (but not nucleocapsid) IgG, IgA, and IgM antibody responses
were readily detectable in saliva from nonhospitalized symptomatic and
asymptomatic patients. Interestingly, antibody responses in the saliva
and serum and symptoms are largely independent of one another (Faustini et al.
2020). In contrast to these results, another study
evaluated the results of a multiplex immunoassay to detect specific
antibodies in the crevicular fluid and found that SARS-CoV-2
antigen-specific IgG responses in matched serum and saliva samples
were significantly correlated. The kinetics of IgG, IgA, and IgM in
the saliva were consistent with those observed in serum (Randad et al.
2020).One advantage of saliva over blood samples is the presence of IgA
antibodies. Serum IgAs have been detected in the serum of COVID-19patients and appear to be detectable earlier than IgM or IgG
antibodies, possibly as early as 2 d after the onset of symptoms
(Yu et al.
2020). In contrast to IgM and IgG antibodies, which are
usually less concentrated in saliva than in blood, IgAs are well
represented because they are the main antibody class found in mucosal
secretions.Recently, a point-of-care ELISA test protocol specifically designed for
IgA detection in saliva (Brevitest IgA Salivary Mucosal Test [BRAVO])
reported a positive predictive agreement of 92% and a negative
predictive agreement of 97% in a group of 38 patients who had
previously tested PCR positive (Varadhachary et al.
2020).
Rapid Salivary Antigen Tests and Point-of-Need Devices
Point-of-need testing (PONT) refers to the use of diagnostic tests outside the
medical offices or laboratories, where a very rapid diagnosis is required to
screen the population, such as cinemas, theaters, schools, universities,
sport facilities, restaurants, shopping centers, and airports (Sabino-Silva et al.
2020). It usually does not require medical personnel or special
equipment and is typically performed with a simple device that can be easily
used by everyone. One example is the pregnancy test.A rapid antigen test is a rapid diagnostic test that detects the presence of an
antigen (i.e., a viral protein on the surface). This distinguishes it from
other medical tests that detect antibodies (antibody tests) or nucleic acids
(molecular-based tests). Unlike serological tests, an antigen test cannot
release a presumed immune passport, since it does not identify the presence
of specific IgG and/or IgM antibodies against SARS-CoV-2. It simply detects
the presence of the virus directly at the moment of analysis. This feature
accounts for its suitability in a mass screening program during the
postepidemic phase.To achieve this aim, any antigen test needs to be capable of widespread
delivery in the targeted territory, in addition to being easily manageable
by nonmedical health care personnel and having a fair price.Keeping these priorities in mind, we have recently published the results of a
study dealing with the diagnostic accuracy of a Rapid Salivary Test (RST)
based on the LFA to detect SARS-CoV-2 (Azzi, Baj, et al. 2020). The test
provided results in less than 10 min, detecting the presence of the spike
protein in the salivary sample. Briefly, the saliva collected from the
subject is applied to a sample pad, and it runs along a nitrocellulose
membrane by capillarity. After 5 to 10 min, the result can be read: if 2
colored bands are visible (both test and control lines), the subject is
infected, while if only the control line is visible, the subject is not
infected (Fig. 4).
We reported a high sensitivity (93%), in contrast to other studies, which
reported a low sensitivity (Nagura-Ikeda et al. 2020). These
differences are probably due to the different performances of the antibodies
used.
Figure 4.
Rapid salivary test (RST) based on lateral flow assay (LFA).
(a) The rapid antigen test recognizes the
presence of a specific viral antigen, such as the spike protein.
Briefly, the salivary sample is applied to a sample pad diluted
with a specific buffer, where it runs along the nitrocellulose
membrane reaching the absorbent pad placed at the opposite site
of the strip. (b) When both the “test-line”
(T-line) and the “control line” (C-line) are visible, the test
is “positive” (Severe Acute Respiratory Syndrome Coronavirus 2
is present). When only the C-line is visible, the test is
“negative.” The test is “invalid” when the C-line is invisible,
regardless of the presence of the T-line. This picture
represents the proof of concept and the prototype of the
diagnostic test published by our group (Azzi, Baj, et al.
2020).
Rapid salivary test (RST) based on lateral flow assay (LFA).
(a) The rapid antigen test recognizes the
presence of a specific viral antigen, such as the spike protein.
Briefly, the salivary sample is applied to a sample pad diluted
with a specific buffer, where it runs along the nitrocellulose
membrane reaching the absorbent pad placed at the opposite site
of the strip. (b) When both the “test-line”
(T-line) and the “control line” (C-line) are visible, the test
is “positive” (Severe Acute Respiratory Syndrome Coronavirus 2
is present). When only the C-line is visible, the test is
“negative.” The test is “invalid” when the C-line is invisible,
regardless of the presence of the T-line. This picture
represents the proof of concept and the prototype of the
diagnostic test published by our group (Azzi, Baj, et al.
2020).The possibility of a rapid antigen test based on salivary diagnosis has
received increasing attention over the past few months, and the prospect of
developing more technologically advanced diagnostic systems using
smartphone-based microfluidic systems with specific biosensors represents
one of the greatest challenges for the near future, especially in case for
other pandemic outbreaks (Farshidfar and Hamedani 2020). An
Israeli group of researchers recently announced a salivary test that could
detect the presence of the virus in 1 s with a 95% success rate by using a
small spectral device and artificial intelligence (SpectraLIT™).
Conclusion
The role of salivary diagnosis during the COVID-19 pandemic has received
increasing attention from researchers worldwide for several reasons. First,
the sensitivity of the salivary sample is comparable to that of respiratory
samples. Second, the oral fluid is self-collected by the subjects who are
going to be tested; thus, the risk of viral transmission for health care
workers is dramatically reduced. Third, saliva can be easily managed since
its collection does not require specialized health care personnel and can be
also performed by trained non–health care professionals. Finally, the use of
this technique can spare medical human resources during the peak of a
pandemic outbreak, which is of paramount importance for the national health
system of a country dealing with such an event.However, not all diagnostic tests are suitable for the diagnosis in every
setting (Fig. 5).
Although rRT-PCR represents the reference standard for molecular diagnosis
in salivary samples, the time required for the analysis limits its
application in a mass screening program; thus, it should be regarded as the
preferred test in hospitals, suitable for COVID-19 inpatients or for
confirming the positive diagnosis provided by tests on other samples,
especially in cases yielding suspected false-negative results by
nasopharyngeal swab analysis. Direct PCR assays without RNA extraction could
be easily applied in an emergency room, in which the operators need certain
results quickly, reducing the risk of personnel contamination.
Figure 5.
The suitable setting for each salivary diagnostic procedure.
(a) In a hospital or centralized laboratory
facility, real-time reverse transcription polymerase chain
reaction (rRT-PCR) represents the reference standard. However,
this procedure requires an adequate supply of reagents and the
presence of specialized personnel. Only selected cases should
undergo this procedure, avoiding thus the crowding of
laboratories and other health facilities. Direct rRT-PCR without
RNA extraction can be used as a preliminary analysis to screen
the suspected COVID-19 patients with suggestive symptoms when
entering the emergency room. (b) Point-of-care
technology represents a valid and useful tool to help physicians
who treat patients in a setting outside the hospital, such as a
general practitioner’s surgery. (c) Point-of-need
devices are suitable for mass screening programs and for the
analysis of salivary samples directly on the field where the
test is needed, like a school, a cinema or theater, a
restaurant, or an airport.
The suitable setting for each salivary diagnostic procedure.
(a) In a hospital or centralized laboratory
facility, real-time reverse transcription polymerase chain
reaction (rRT-PCR) represents the reference standard. However,
this procedure requires an adequate supply of reagents and the
presence of specialized personnel. Only selected cases should
undergo this procedure, avoiding thus the crowding of
laboratories and other health facilities. Direct rRT-PCR without
RNA extraction can be used as a preliminary analysis to screen
the suspected COVID-19patients with suggestive symptoms when
entering the emergency room. (b) Point-of-care
technology represents a valid and useful tool to help physicians
who treat patients in a setting outside the hospital, such as a
general practitioner’s surgery. (c) Point-of-need
devices are suitable for mass screening programs and for the
analysis of salivary samples directly on the field where the
test is needed, like a school, a cinema or theater, a
restaurant, or an airport.Salivary diagnostics find its main field of application in a setting outside
the hospital, especially in medical practice (point-of-care). In this
context, this kind of technology should provide results within 30 to 60 min
and be performed by nonspecialized medical staff, and the devices should be
easy to use and portable.Finally, the role of salivary diagnostics is promising for direct testing in
the field (point-of-need) in places of social aggregation. Identifying
asymptomatic infectious subjects before they enter an enclosed space and
spread the infection to other individuals represents the main worrisome
issue for all public institutions, private businesses, or social activities
(Lavezzo et al.
2020). The economic crisis that has followed the health
emergency caused by the epidemic will soon make it unsustainable to lengthen
any widespread lockdown protocol or extend heavy restrictions for people’s
travels. Therefore, a mass screening program is necessary, and it should
rely on devices that can also be used by nonmedical staff to quickly assess
whether an individual is infectious. Rapid salivary antigen tests may
represent a key strategy for mass containment of the pandemic outbreak.
Author Contributions
L. Azzi, contributed to conception, design, and data acquisition, drafted the
manuscript; V. Maurino, M. Lualdi, contributed to data acquisition and
interpretation, drafted the manuscript; A. Baj, contributed to conception
and design, drafted the manuscript; M. Dani, A. d’Aiuto, contributed to data
analysis and interpretation, drafted the manuscript; M. Fasano, F. Sessa,
contributed to conception, design, critically revised the manuscript; T.
Alberio, contributed to conception, design, data analysis, and
interpretation, critically revised the manuscript. All authors gave final
approval and agree to be accountable for all aspects of the work.Click here for additional data file.Supplemental material, DS_10.1177_0022034520969670 for Diagnostic
Salivary Tests for SARS-CoV-2 by L. Azzi, V. Maurino, A. Baj, M. Dani,
A. d’Aiuto, M. Fasano, M. Lualdi, F. Sessa and T. Alberio in Journal
of Dental Research
Authors: Daniel F Escobar; Pablo Díaz; Diego Díaz-Dinamarca; Rodrigo Puentes; Pedro Alarcón; Bárbara Alarcón; Iván Rodríguez; Ricardo A Manzo; Daniel A Soto; Liliana Lamperti; Janepsy Díaz; Heriberto E García-Escorza; Abel E Vasquez Journal: Front Public Health Date: 2021-12-02
Authors: Nima Farshidfar; Dana Jafarpour; Shahram Hamedani; Arkadiusz Dziedzic; Marta Tanasiewicz Journal: J Clin Med Date: 2021-05-14 Impact factor: 4.241