| Literature DB >> 33122698 |
Azmawati Mohammed Nawi1,2, Siok Fong Chin3, Luqman Mazlan4, Rahman Jamal5.
Abstract
The burden of colorectal cancer (CRC) is increasing worldwide especially in developing countries. This phenomenon may be attributable to lifestyle, dietary and environmental risk factors. We aimed to determine the level of 25 trace elements, their interaction with environmental risk factors, and subsequently develop a risk prediction model for CRC (RPM CRC). For the discovery phase, we used a hospital-based case-control study (CRC and non-CRC patients) and in the validation phase we analysed pre-symptomatic samples of CRC patients from The Malaysian Cohort Biobank. Information on the environmental risk factors were obtained and level of 25 trace elements measured using the ICP-MS method. CRC patients had lower Zn and Se levels but higher Li, Be, Al, Co, Cu, As, Cd, Rb, Ba, Hg, Tl, and Pb levels compared to non-CRC patients. The positive interaction between red meat intake ≥ 50 g/day and Co ≥ 4.77 µg/L (AP 0.97; 95% CI 0.91, 1.03) doubled the risk of CRC. A panel of 24 trace elements can predict simultaneously and accurate of high, moderate, and low risk of CRC (accuracy 100%, AUC 1.00). This study provides a new input on possible roles for various trace elements in CRC as well as using a panel of trace elements as a screening approach to CRC.Entities:
Year: 2020 PMID: 33122698 PMCID: PMC7596468 DOI: 10.1038/s41598-020-75760-9
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Selected 14 trace elements with significant difference concentration among CRC and non-CRC patients.
Comparison of trace elements correlation (correlation coefficient, r ≥ 0.5) between CRC and non-CRC groups.
| Correlation | CRC | Non CRC | ||
|---|---|---|---|---|
| r value | r value | |||
| Ba–Ga | 0.68 | < 0.001 | 0.56 | < 0.001 |
| Ag–Ga | 0.67 | < 0.001 | 0.57 | < 0.001 |
| Ga–Mn | 0.61 | < 0.001 | 0.72 | < 0.001 |
| Ba–Ag | 0.58 | < 0.001 | 0.61 | < 0.001 |
| Ni–Cr | 0.57 | < 0.001 | 0.65 | < 0.001 |
| Ba–Sr | 0.57 | < 0.001 | 0.60 | < 0.001 |
| Mn–Li | 0.55 | < 0.001 | 0.63 | < 0.001 |
| U–Ag | 0.50 | < 0.001 | 0.65 | < 0.001 |
| Ba–Cs | 0.68 | < 0.001 | NS | |
| Cs–Ga | 0.68 | < 0.001 | NS | |
| U–Li | 0.66 | < 0.001 | NS | |
| Cs–Ag | 0.64 | < 0.001 | NS | |
| Ba–Mn | 0.63 | < 0.001 | NS | |
| U–Ba | 0.62 | < 0.001 | NS | |
| Ag–Sr | 0.61 | < 0.001 | NS | |
| Cs–Sr | 0.60 | < 0.001 | NS | |
| Pb–TI | 0.60 | < 0.001 | NS | |
| Pb–Al | 0.59 | < 0.001 | NS | |
| Ba–Li | 0.59 | < 0.001 | NS | |
| Sr–Ga | 0.58 | < 0.001 | NS | |
| Ga–Be | 0.56 | < 0.001 | NS | |
| Ag–Be | 0.56 | < 0.001 | NS | |
| Mn–Al | 0.54 | < 0.001 | NS | |
| Cs–Be | 0.53 | < 0.001 | NS | |
| Cs–Mn | 0.52 | < 0.001 | NS | |
| TI–Al | 0.52 | < 0.001 | NS | |
| Cs–V | 0.52 | < 0.001 | NS | |
| Pb–C0 | 0.52 | < 0.001 | NS | |
| V–Be | 0.51 | < 0.001 | NS | |
| U–Ga | 0.51 | < 0.001 | NS | |
| U–Mn | 0.51 | < 0.001 | NS | |
| Ba–Be | 0.51 | < 0.001 | NS | |
| U–Sr | 0.50 | < 0.001 | NS | |
| Ag–Mn | 0.50 | < 0.001 | NS | |
| V–Al | 0.50 | < 0.001 | NS | |
| Ba–Al | NS | 0.81 | < 0.001 | |
| Ni–Al | NS | − 0.67 | < 0.001 | |
| Ga–Li | NS | 0.64 | < 0.001 | |
| Cr–Al | NS | − 0.60 | < 0.001 | |
| Ba–Ni | NS | − 0.60 | < 0.001 | |
| Ag–Al | NS | 0.56 | < 0.001 | |
| Ga–Al | NS | 0.56 | < 0.001 | |
| Cr–Mg | NS | 0.55 | < 0.001 | |
| Sr–Mn | NS | 0.54 | < 0.001 | |
| Sr–Rb | NS | 0.52 | < 0.001 | |
| U–TI | NS | 0.51 | < 0.001 | |
Figure 2Dendogram using Ward Linkage for 25 trace elements. Different cluster patterns were observed among (a) CRC patients, (b) non-CRC patients.
Figure 3Trace elements distribution. (a) PCA showed a distribution of 25 trace elements in the CRC and non-CRC group in the adjacent cluster and can be distinguished by the three main components. (b) PCA shows a clear cluster for CRC and non-CRC group based on the distribution of 14 significant trace elements (c) Plot scree shows the variance explained with the three main components of the 25 trace elements is 40.8% while the addition to the five components can improve the explained of the variance to 54.1%. (d) Plot scree shows the variance explained with the three main components of 14 trace elements is 56.3% while adding to five components can increase the variance explained to 70.4%.
Evaluation of single/ratio trace elements as a biomarker for CRC and comparison with the reported normal range.
| Trace elements | Suggested cut off value (ug/L) | AUC ( 95CI) | Reported normal range (ug/L) | Reference | |
|---|---|---|---|---|---|
| Li | 3633.62 | 0.60 (0.52–0.68) | 0.016 | NA | NA |
| Be | 0.93 | 0.80 (0.75–0.86)* | < 0.001 | 0.28–1.00 | ATSDR 2002 |
| Al | 95.02 | 0.73 (0.65–0.80) | < 0.001 | 1.00–3.00 | ATSDR 2011 |
| Co | 4.77 | 0.72 (0.65–0.79) | < 0.001 | 5.70–7.90 | ATSDR 2004 |
| Cu | 1892.77 | 0.59 (0.51–0.67) | 0.026 | 2390.00–3460.00 | ATSDR 2004 |
| Zn | 1103.06 | 0.83 (0.77–0.89)* | < 0.001 | 1000 | ATSDR 2005 |
| As | 0.94 | 0.64 (0.60–0.72) | < 0.001 | < 1.00 | ATSDR 2007 |
| Se | 81.74 | 0.66 (0.58–0.73) | < 0.001 | 125 | ATSDR 2003 |
| Rb | 12.63 | 0.67 (0.60–0.74) | < 0.001 | NA | NA |
| Cd | 0.19 | 0.71 (0.64–0.78) | < 0.001 | 0.31 | ATSDR 2012 |
| Ba | 151.03 | 0.66 (0.58–0.73) | < 0.001 | NA | NA |
| Hg | 0.76 | 0.62 (0.54–0.70) | 0.003 | 0.5 | ASTDR 1999 |
| TI | 0.41 | 0.63 (0.56–0.71) | 0.001 | NA | NA |
| Pb | 0.53 | 0.65 (0.58–0.73) | < 0.001 | 15 | ASTDR 2007 |
AUC area under curve, PPV positive predictive value, NPV negative predictive value.
Interaction analysis between red meat intake with Zn, Co and Al levels.
| Trace elements | Red meat intake | CRC | Non-CRC | Univariatea | Adjustedb | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| (ug/L) | (g/day) | n | n | OR | (95% CI) | Interaction | ORINT | ORINT 95%CI | OR | 95%CI | Interaction | ORINT | ORINT 95%CI |
| Zn ≥ 1103.06 | − | 6 | 66 | 1 | Multiplicative | 5.49 | (3.48, 8.65) | 1 | Multiplicative | 0.53 | (0.04, 7.34) | ||
| Zn < 1103.06 | − | 22 | 16 | 15.13 | (5.27, 43.44) | RERI | 0.27 | (0.03, 0.50) | 25.87 | (4.49, 149.10) | RERI | 0.22 | (− 0.13, 0.57) |
| Zn ≥ 1103.06 | + | 18 | 16 | 12.37 | (4.23, 36.19) | AP | 0.92 | (0.83, 1.01) | 16.8 | (1.02, 102.89) | AP | 0.95 | (0.89, 1.03) |
| Zn < 1103.06 | + | 56 | 4 | 154 | (41.37, 573.21) | 150.35 | (5.51, 4103.67) | ||||||
| Co < 4.77 | − | 14 | 68 | 1 | Multiplicative | 5.6 | (3.45, 9.09) | 1 | Multiplicative | 0.72 | (0.04, 12.16) | ||
| Co ≥ 4.77 | − | 14 | 14 | 4.86 | (1.90, 12.41) | RERI | 0.49 | (0.06, 0.92) | 8.63 | (1.58, 47.09) | RERI | 0.52 | (− 0.42, 1.46) |
| Co < 4.77 | + | 29 | 16 | 8.8 | (3.81, 20.36) | AP | 0.89 | (0.79, 0.98) | 25.93 | (2.21, 303.90) | AP | 0.97 | (0.91, 1.03) |
| Co ≥ 4.77 | + | 45 | 4 | 54.64 | (16.90, 176.64) | 55.5 | (3.98, 773.62) | ||||||
| Al < 95.02 | − | 6 | 60 | 1 | Multiplicative | 6.6 | (4.01, 10.83) | 1 | Multiplicative | 72.76 | (0.55, 9673.37) | ||
| Al ≥ 95.02 | − | 22 | 22 | 10 | (3.58, 27.91) | RERI | 0.25 | (0.03, 0.47) | 10.69 | (1.73, 66.13) | RERI | 0.21 | (− 0.11, 0.53) |
| Al < 95.02 | + | 18 | 19 | 9.47 | (3.29, 27.30) | AP | 0.89 | (0.78, 1.01) | 28.34 | (1.50, 536.77) | AP | 0.88 | (0.68, 1.09) |
| Al ≥ 95.02 | + | 56 | 1 | 560 | (65.35, 4798.38) | 32.97 | (1.93, 562.08) | ||||||
OR odds ratio, ORINT odds ratio due to interaction.
aNot adjusted to other factors, bAdjusted to all environmental risk factors.
Development of CRC RPM (high and low risk) using trace element, environmental risk factors and a combination of trace element-environmental risk factors.
| Evaluation criteria | Trace element-based | Environmental factor-based | Trace element-based & environmental factor-based | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Training data (n = 159) | Test data (n = 40) | Training data (n = 159) | Test data (n = 40) | Training data (n = 159) | Test data (n = 40) | |||||||||||||
| SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | |
| Correctly classified | 146 | 157 | 147 | 39 | 37 | 37 | 132 | 127 | 126 | 29 | 31 | 30 | 155 | 157 | 159 | 39 | 38 | 39 |
| Incorrectly classified | 13 | 2 | 12 | 1 | 3 | 3 | 27 | 32 | 33 | 11 | 9 | 10 | 4 | 2 | 0 | 1 | 2 | 1 |
| Accuracy (%) | 91.8 | 98.7 | 92.5 | 97.5 | 92.5 | 92.5 | 83.0 | 79.8 | 79.3 | 72.5 | 77.5 | 75.0 | 97.5 | 98.7 | 100.0 | 97.5 | 95.0 | 97.5 |
| Sensitivity | 0.89 | 0.99 | 0.92 | 1.00 | 0.95 | 1.00 | 0.85 | 0.83 | 0.81 | 0.85 | 0.79 | 0.81 | 1.00 | 0.98 | 1.00 | 1.00 | 0.91 | 0.95 |
| Specificity | 0.94 | 0.99 | 0.93 | 0.95 | 0.90 | 0.87 | 0.81 | 0.77 | 0.78 | 0.67 | 0.76 | 0.71 | 0.95 | 1.00 | 1.00 | 0.95 | 1.00 | 1.00 |
| PPV | 0.95 | 0.99 | 0.94 | 0.95 | 0.90 | 0.85 | 0.82 | 0.77 | 0.78 | 0.55 | 0.75 | 0.65 | 0.95 | 1.00 | 1.00 | 0.95 | 1.00 | 1.00 |
| NPV | 0.88 | 0.99 | 0.91 | 1.00 | 0.95 | 1.00 | 0.84 | 0.83 | 0.81 | 0.90 | 0.80 | 0.85 | 1.00 | 0.97 | 1.00 | 1.00 | 0.90 | 0.95 |
| Variable | 14 | 14 | 14 | 14 | 14 | 14 | 6 | 6 | 6 | 6 | 6 | 6 | 20 | 20 | 20 | 20 | 20 | 20 |
| Kappa Statistic | 0.84 | 0.97 | 0.85 | 0.95 | 0.85 | 0.85 | 0.66 | 0.60 | 0.59 | 0.45 | 0.55 | 0.50 | 0.95 | 0.97 | 1.00 | 0.95 | 0.90 | 0.95 |
| RMSE | NA | NA | NA | 0.0045 | 0.0034 | 0.0046 | NA | NA | NA | 0.0041 | 0.0039 | 0.0039 | NA | NA | NA | 0.005 | 0.0047 | 0.0035 |
| AUC | 0.98 | 0.99 | 0.98 | 1.00 | 0.98 | 0.99 | 0.90 | 0.84 | 0.87 | 0.78 | 0.87 | 0.88 | 0.99 | 1.00 | 1.00 | 1.00 | 1.00 | 0.99 |
SVM support vector machine, ANN artificial neural network, LR logistic regression, RMSE root mean square error, PPV positive predictive value, NPV negative predictive value.
Figure 4Validation of CRC RPM among ASX CRC (n = 90).
Development of CRC RPM (high, moderate and low risk) using trace element, environmental risk factors and a combination of trace element-environmental risk factors.
| Evaluation Criteria | Trace element-based | Environmental factor-based | Trace element-based & Environmental factor-based | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Training data (n = 168) | Test data (n = 52) | Training data (n = 168) | Test data (n = 52) | Training data (n = 168) | Test data (n = 52) | |||||||||||||
| SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | SVM | ANN | LR | |
| Correctly classified | 161 | 141 | 168 | 46 | 39 | 47 | 142 | 110 | 125 | 31 | 32 | 35 | 168 | 157 | 168 | 42 | 45 | 45 |
| Incorrectly classified | 7 | 27 | 0 | 6 | 13 | 5 | 26 | 58 | 43 | 21 | 20 | 17 | 0 | 11 | 0 | 10 | 7 | 7 |
| Accuracy (%) | 95.8 | 84.0 | 100.0 | 88.5 | 75.0 | 100.0 | 84.5 | 65.5 | 74.4 | 59.6 | 61.5 | 67.3 | 100.0 | 93.5 | 100.0 | 80.8 | 86.5 | 86.5 |
| Sensitivity | 0.97 | 0.82 | 1.00 | 0.85 | 0.70 | 1.00 | 0.84 | 0.70 | 0.69 | 0.50 | 0.65 | 0.65 | 1.00 | 1.00 | 1.00 | 0.75 | 1.00 | 0.85 |
| Specificity | 0.97 | 0.89 | 1.00 | 0.94 | 0.81 | 1.00 | 0.93 | 0.71 | 0.86 | 0.78 | 0.72 | 0.78 | 1.00 | 0.94 | 1.00 | 0.88 | 0.81 | 0.91 |
| PPV | 0.95 | 0.81 | 1.00 | 0.89 | 0.70 | 1.00 | 0.86 | 0.58 | 0.74 | 0.59 | 0.59 | 0.65 | 1.00 | 0.90 | 1.00 | 0.79 | 0.77 | 0.85 |
| NPV | 0.98 | 0.90 | 1.00 | 0.91 | 0.81 | 1.00 | 0.91 | 0.81 | 0.83 | 0.71 | 0.77 | 0.78 | 1.00 | 1.00 | 1.00 | 0.85 | 1.00 | 0.91 |
| Sensitivity | 0.98 | 0.92 | 1.00 | 1.00 | 0.04 | 1.00 | 0.88 | 0.59 | 0.82 | 0.64 | 0.45 | 0.73 | 1.00 | 0.86 | 1.00 | 1.00 | 0.82 | 0.91 |
| Specificity | 0.97 | 0.97 | 1.00 | 0.98 | 0.72 | 1.00 | 0.93 | 0.94 | 0.91 | 0.88 | 0.90 | 0.90 | 1.00 | 1.00 | 1.00 | 0.93 | 1.00 | 0.98 |
| PPV | 0.93 | 0.92 | 1.00 | 0.92 | 0.04 | 1.00 | 0.85 | 0.81 | 0.81 | 0.58 | 0.56 | 0.67 | 1.00 | 1.00 | 1.00 | 0.79 | 1.00 | 0.91 |
| NPV | 0.99 | 0.97 | 1.00 | 1.00 | 0.67 | 1.00 | 0.95 | 0.84 | 0.92 | 0.90 | 0.86 | 0.93 | 1.00 | 0.94 | 1.00 | 1.00 | 0.95 | 0.98 |
| Variable | 24 | 24 | 24 | 24 | 24 | 24 | 8 | 8 | 8 | 8 | 8 | 8 | 32 | 32 | 32 | 32 | 32 | 32 |
| Kappa Statistic | 0.94 | 0.76 | 1.00 | 0.82 | 0.61 | 0.85 | 0.77 | 0.48 | 0.62 | 0.38 | 0.40 | 0.50 | 1.00 | 0.90 | 1.00 | 0.71 | 0.79 | 0.79 |
| AUC | 0.98 | 0.99 | 1.00 | 0.99 | 0.86 | 1.00 | 0.88 | 0.88 | 0.90 | 0.86 | 0.77 | 0.83 | 1.00 | 0.97 | 1.00 | 0.88 | 0.88 | 0.94 |
SVM support vector machine, ANN artificial neural network, LR logistic regression, RMSE root mean square error, PPV positive predictive value, NPV negative predictive value.
Figure 5Validation of CRC RPM using validation data (n = 69).