| Literature DB >> 33117328 |
Maria Chitty-Lopez1, Emma Westermann-Clark1, Irina Dawson1, Boglarka Ujhazi1, Krisztian Csomos1, Kerry Dobbs2, Khuong Le2, Yasuhiro Yamazaki2, Amir A Sadighi Akha3, Deepak Chellapandian4, Ben Oshrine4, Luigi D Notarangelo2, Gauri Sunkersett4, Jennifer W Leiding1, Jolan E Walter1,5.
Abstract
The T-cell receptor excision circle (TREC) assay detects T-cell lymphopenia (TCL) in newborns and is especially important to identify severe combined immunodeficiency (SCID). A spectrum of SCID variants and non-SCID conditions that present with TCL are being discovered with increasing frequency by newborn screening (NBS). Recombination-activating gene (RAG) deficiency is one the most common causes of classical and atypical SCID and other conditions with immune dysregulation. We present the case of an asymptomatic male with undetectable TRECs on NBS at 1 week of age. The asymptomatic newborn was found to have severe TCL, but normal B cell quantities and lymphocyte proliferation upon mitogen stimulation. Next generation sequencing revealed compound heterozygous hypomorphic RAG variants, one of which was novel. The moderately decreased recombinase activity of the RAG variants (16 and 40%) resulted in abnormal T and B-cell receptor repertoires, decreased fraction of CD3+ TCRVα7.2+ T cells and an immune phenotype consistent with the RAG hypomorphic variants. The patient underwent successful treatment with hematopoietic stem cell transplantation (HSCT) at 5 months of age. This case illustrates how after identification of a novel RAG variant, in vitro studies are important to confirm the pathogenicity of the variant. This confirmation allows the clinician to expedite definitive treatment with HSCT in an asymptomatic phase, mitigating the risk of serious infectious and non-infectious complications.Entities:
Keywords: HSCT; SCID; asymptomatic infant; immunodeficiency; newborn screening; recombinase activating gene (RAG)
Mesh:
Substances:
Year: 2020 PMID: 33117328 PMCID: PMC7552884 DOI: 10.3389/fimmu.2020.01954
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Laboratory assessments.
| WBC | 6,500 (L) | 2,430 | 11,600 | 15,500 (H) | 8,570 | 7,200–18,000 | 6,400–12,000 | |
| Lymphocyte | 1,705 (L) | 1,370 (L) | 1,221 (L) | 1,845 (L) | 1,395 (L) | 2,064 | 3,400–7,600 | 3,600–8,900 |
| CD3+ absolute | 261 (L) | 202 (L) | 203 (L) | 858 (L) | 529 (L) | 1,182 | 2,500–5,500 | 2,100–6,200 |
| CD4+ absolute | 189 (L) | 138 (L) | 15 (L) | 589 (L) | 310 (L) | 719 | 1,600–4,000 | 1,300–3,400 |
| CD8+ absolute | 60 (L) | 55 (L) | 45 (L) | 137 (L) | 125 (L) | 312 (L) | 560–1,700 | 620–2,000 |
| CD19+ absolute | 426 | 608 | 476 | 788 | 433 | 281 (L) | 300–2,000 | 720–2,600 |
| CD56+ absolute | 967 | 523 | 538 | 207 | 417 | 574 | 170–1,100 | 180–920 |
| CD4/CD45RA absolute and % of total CD4 | 82 (L) (60%) | 87 (L) (60%) | 1,200–3,700 | 1,000–2,900 | ||||
| CD8/CD45RA absolute and % of total CD8 | 40 (L) (72%) | 37 (L) (82%) | 450–1,500 | 490–1,700 | ||||
| Unit: mg/dl | ||||||||
| IgG | 1,000 | 608 | 570 | 514 | 605 | 569 | 251–906 | 345–1,213 |
| IgM | 27 | 27 | 49 | 57 | 120 | 20–87 | 43–173 | |
| IgA | <7 (< L) | <7 (L) | 81 | 118 | 181 (H) | 1.3–53 | 14–106 | |
| Lymphocyte viability, LPM | (L) 64.5 | >74.9 | ||||||
| PWM-induced, CD45 | 33 | >4.4 | ||||||
| PWM-induced, CD3 | 42.1 | >3.4 | ||||||
| PWM-induced, CD19 | 6.4 | >3.8 | ||||||
| PHA-induced, CD45 | 75.1 | >49.8 | ||||||
| PHA-induced, CD3 | 89.6 | >58.4 | ||||||
| PHA- induced, CMP | 74,853 | 147,025 | 223,240 | 3,700–265,00 | 73,700–265,000 | |||
| PHA- induced, SI | 536 | 355 | 1,432 | |||||
| Con-A-induced, CMP | 61,045 | 82,251 | 92,041 | 6,100–283,00 | 46,100–283,000 | |||
| Con-A-induced, SI | 437 | 199 | 591 | |||||
| PWM-induced, CMP | 44,852 | 62,143 | 47,668 | 9,100–125,00 | 29,100–125,000 | |||
| PWM-induced, SI | 321 | 151 | 307 | |||||
| NKC, Pct cytotoxicity 50:1 | 25 | |||||||
| NKC, Pct cytotoxicity 25:1 | 24 | |||||||
| NKC, Pct cytotoxicity 12:1 | 15 | |||||||
| NKC, Pct cytotoxicity 6:1 | 11.5 | |||||||
| NKC, CD16/56 positive | 27 (H) | |||||||
WBC, white blood cell count; PWM, pokeweed mitogen; PHA, phytohemagglutinin; Con-A, concanavalin A; NKC, natural killer cells; SI, stimulation index.
Figure 1(A) NGS identified two heterozygous missense variants in trans in RAG1. Relative recombination activity level of the two alleles [16% (ref 16) and 40% (novel variant, measured in this study)] predict an overall relative recombinase activity of 28% that is characteristic of CID-G/AI phenotype (*based on gnomAD 12/2019). (B) CD3+ T cells analyzed by spectratyping using 28 probes to measure CDR3 length variability in 23 TCRVβ families and sub-families. Families 2 to 18 are selected for representation. The following families demonstrated an oligoclonal distribution, i.e., <5 peaks: 3–1, 5, 6–4, 10–1, 10, 13, 14, and 18; family 16 had no peak. Each is identified with an * in the upper right corner. (C) Detection of Vα7.2 segment in CD3+ T lymphocytes by flow cytometry shows that the patient had near absence of CD3+T cells expressing the TCR Vα 7.2 chain [encoded by a distal V TCR locus] compared to healthy control and family members (measured in collaboration with the NIH). (D) Frequency of individual IGHJ gene usage of memory B cell receptor repertoire shows decrease in usage of the distal IGHJ5 and IGHJ6 gene elements in patient compared to age matched healthy donor.