Literature DB >> 33112975

Exploration of Microbial Diversity of Himalayan Glacier Moraine Soil Using 16S Amplicon Sequencing and Phospholipid Fatty Acid Analysis Approaches.

Mingma Thundu Sherpa1, Ishfaq Nabi Najar1, Sayak Das1, Nagendra Thakur2.   

Abstract

Changme Khangpu glacier is located in the northern district of Sikkim which comes under UNESCO heritage site Kanchenjunga Biosphere Reserve which is considered as one of the important biological hotspot regions in the Eastern Himalayas. This is the first report on microbial diversity analysis of moraine soil from one of the unexplored glaciers of Sikkim using high throughput sequencing platform and phospholipid fatty acids analysis (PLFA). It was found that the 16S amplicon sequence comprised 362,902 raw sequences with a sequence length of 150 bp and (G + C) content 52%. A total of 156,821 pre-processed reads were clustered into 378 OTUs (operational taxonomic units) comprising 6 bacterial phyla. The top four dominant phyla based on the 16S amplicon sequences were Proteobacteria (56%), Firmicutes (16%), Actinobacteria (12%), and Bacteroidetes (8%), respectively. PLFA analysis confirmed the dominance of Gram positive bacteria (72%) followed by Gram negative bacteria (32%) and the major fatty acids which are present in the moraine soil sample were PUFA (61%), and 18:2ω6,9c (29%). This is the primary study and first of its kind done on moraine soil from glaciers of Sikkim. Based on 16S amplicon sequencing and PLFA analysis of moraine soil samples from glaciers of Sikkim suggest that this glaciers harbours rich microbial diversity and thus can have wide industrial and biotechnological potential. Thus, there is an escalating scope to further study these extreme biomes with respect to their microbial diversity and their functional capabilities.

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Year:  2020        PMID: 33112975     DOI: 10.1007/s00284-020-02259-x

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  25 in total

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Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

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Journal:  Environ Microbiol       Date:  2003-05       Impact factor: 5.491

4.  Phylogenetic and physiological diversity of microorganisms isolated from a deep greenland glacier ice core.

Authors:  V I Miteva; P P Sheridan; J E Brenchley
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

Review 5.  Strategies for culture of 'unculturable' bacteria.

Authors:  Sonia R Vartoukian; Richard M Palmer; William G Wade
Journal:  FEMS Microbiol Lett       Date:  2010-04-27       Impact factor: 2.742

6.  16S rRNA sequences and differences in bacteria isolated from the Muztag Ata glacier at increasing depths.

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Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

7.  Bacterial Diversity in an Alpine Debris-Free and Debris-Cover Accumulation Zone Glacier Ice, North Sikkim, India.

Authors:  Mingma Thundu Sherpa; Ishfaq Nabi Najar; Sayak Das; Nagendra Thakur
Journal:  Indian J Microbiol       Date:  2018-06-06       Impact factor: 2.461

8.  Phospholipid fatty acid (PLFA) analysis for profiling microbial communities in offshore produced water.

Authors:  Fuqiang Fan; Baiyu Zhang; Penny L Morrill
Journal:  Mar Pollut Bull       Date:  2017-06-24       Impact factor: 5.553

9.  Culturable bacteria in subglacial sediments and ice from two Southern Hemisphere glaciers.

Authors:  J Foght; J Aislabie; S Turner; C E Brown; J Ryburn; D J Saul; W Lawson
Journal:  Microb Ecol       Date:  2004-03-04       Impact factor: 4.552

10.  Extremophiles and extreme environments.

Authors:  Pabulo Henrique Rampelotto
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