| Literature DB >> 33111630 |
Ruifeng Xun1,2, Hougen Lu3, Xianwang Wang1.
Abstract
Hepatocellular carcinoma (HCC) is the most aggressive type of gastrointestinal tumor, with a high rate of mortality. However, identifying biomarkers for the treatment of HCC remains to be developed. We aimed to determine whether cell division cycle 25C (CDC25C) could be used as a novel diagnostic and therapeutic biomarker in HCC. Expression of CDC25C in HCC was analyzed by using GEPIA (Gene Expression Profiling Interactive Analysis) and UALCAN databases. GEPIA and CBioPortal databases were applied to analyze patients'survival and CDC25C mutations, respectively. PPI (Protein-Protein Interaction) network was further built by STRING (Search Tool for the Retrieval of Interacting Genes) and Metascape Web portals. To the best of our knowledge, the novel observations identified in the present study reveal that the expression of CDC25C in HCC was significantly enhanced when compare to that in normal liver tissues (P < 0.001). A higher CDC25C expression resulted in a remarkably shorter disease free survival as well as overall survival. Moreover, the expression of CDC25C in HCC was related to HCC patients'grade and race, but not gender. The expression levels of CDC25C elevated gradually from stage 1 to 3 but decreased in stage 4. The specific gene mutations V41A, L87 H, N222 K and X309-splice of CDC25C occurred in HCC samples and these unique mutations were not detected in any other tumor tissues. Finally, PPI networks and GO enrichment analysis suggested that CDC25C might be associated with cell cycle and p53 signaling pathway. Taken together, bioinformatics analysis revealed that CDC25C might be a potential diagnostic predictor for HCC.Entities:
Keywords: CDC25C; HCC; biomarker; cancer therapy; the cancer genome atlas (TCGA)
Year: 2020 PMID: 33111630 PMCID: PMC7607810 DOI: 10.1177/1533033820967474
Source DB: PubMed Journal: Technol Cancer Res Treat ISSN: 1533-0338
Figure 1.Expression of CDC25C in patients with HCC. (A) The expression of CDC25C in HCC obtained from GEPIA online tool (P < 0.001; tumor vs. normal). (B) Expression of CDC25C in HCC based on race (P < 0.05; Caucasian vs. Asian), and (C) individual cancer grade (P < 0.001; grade 1 vs. grade 3; grade 2 vs. grade 3;grade 1 vs. grade 4; grade 2 vs. grade 4) and (D) individual cancer stage (P < 0.001; stage 1 vs. stage 2; stage 1 vs. stage 3).*, P < 0.05;**, P < 0.01;***, P < 0.001.
Figure 2.Higher expressions of CDC25C was associated with poorer DFS (A) and OS (B) in HCC patients. (P < 0.0001).
Figure 3.PPI network of the top 10 hub genes related to CDC25C.
Figure 4.GO enrichment analysis of the top 10 hub genes.
Significantly Enriched GO Terms and KEGG Pathways of CDC25C.
| Category | Terms | Count | % | P |
|---|---|---|---|---|
| GO-TERM-BP-DIRECT | G2/M transition of mitotic cell cycle | 7 | 70 | 2.2E-11 |
| GO-TERM-BP-DIRECT | cell division | 6 | 60 | 4.5E-7 |
| GO-TERM-BP-DIRECT | mitotic nuclear envelope disassembly | 4 | 40 | 1.4E-6 |
| GO-TERM-BP-DIRECT | DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest | 4 | 40 | 4.0E-6 |
| GO-TERM-BP-DIRECT | mitotic nuclear division | 5 | 50 | 5.5E-6 |
| GO-TERM-BP-DIRECT | replicative senescence | 3 | 30 | 1.7E-5 |
| GO-TERM-BP-DIRECT | regulation of cell cycle | 4 | 40 | 3.2E-5 |
| GO-TERM-BP-DIRECT | regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle | 3 | 30 | 6.4E-5 |
| GO-TERM-BP-DIRECT | positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition | 3 | 30 | 7.1E-4 |
| GO-TERM-BP-DIRECT | anaphase-promoting complex-dependent catabolic process | 3 | 30 | 7.7E-4 |
| GO-TERM-BP-DIRECT | cellular response to hypoxia | 3 | 30 | 1.1E-3 |
| GO-TERM-BP-DIRECT | negative regulation of apoptotic process | 4 | 40 | 1.5E-3 |
| GO-TERM-BP-DIRECT | protein complex assembly | 3 | 30 | 1.7E-3 |
| GO-TERM-BP-DIRECT | regulation of signal transduction by p53 class mediator | 3 | 30 | 1.9E-3 |
| GO-TERM-BP-DIRECT | peptidyl-serine phosphorylation | 3 | 30 | 1.9E-3 |
| GO-TERM-BP-DIRECT | regulation of cell cycle G2/M phase transition | 2 | 20 | 2.7E-3 |
| GO-TERM-BP-DIRECT | protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3 | 30 | 2.8E-3 |
| GO-TERM-BP-DIRECT | DNA damage induced protein phosphorylation | 2 | 20 | 4.3E-3 |
| GO-TERM-BP-DIRECT | cellular response to DNA damage stimulus | 3 | 30 | 5.2E-3 |
| GO-TERM-BP-DIRECT | ventricular cardiac muscle cell development | 2 | 20 | 5.3E-3 |
| GO-TERM-BP-DIRECT | mitotic G2 DNA damage checkpoint | 2 | 20 | 8.0E-3 |
| GO-TERM-BP-DIRECT | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator | 2 | 20 | 8.5E-3 |
| GO-TERM-BP-DIRECT | G2 DNA damage checkpoint | 2 | 20 | 1.1E-2 |
| GO-TERM-BP-DIRECT | positive regulation of protein localization to nucleus | 2 | 20 | 1.1E-2 |
| GO-TERM-BP-DIRECT | positive regulation of cardiac muscle cell proliferation | 2 | 20 | 1.2E-2 |
| GO-TERM-BP-DIRECT | cell aging | 2 | 20 | 1.3E-2 |
| GO-TERM-BP-DIRECT | positive regulation of mitotic cell cycle | 2 | 20 | 1.5E-2 |
| GO-TERM-BP-DIRECT | cell proliferation | 3 | 30 | 1.5E-2 |
| GO-TERM-BP-DIRECT | DNA damage checkpoint | 2 | 20 | 1.6E-2 |
| GO-TERM-BP-DIRECT | positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway | 2 | 20 | 1.6E-2 |
| GO-TERM-BP-DIRECT | intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator | 2 | 20 | 1.6E-2 |
| GO-TERM-BP-DIRECT | response to gamma radiation | 2 | 20 | 1.6E-2 |
| GO-TERM-BP-DIRECT | peptidyl-threonine phosphorylation | 2 | 20 | 2.0E-2 |
| GO-TERM-BP-DIRECT | organ regeneration | 2 | 20 | 2.5E-2 |
| GO-TERM-BP-DIRECT | positive regulation of fibroblast proliferation | 2 | 20 | 2.9E-2 |
| GO-TERM-BP-DIRECT | cellular response to drug | 2 | 20 | 3.6E-2 |
| GO-TERM-BP-DIRECT | Ras protein signal transduction | 2 | 20 | 3.7E-2 |
| GO-TERM-CC-DIRECT | Nucleoplasm | 10 | 100 | 4.5E-8 |
| GO-TERM-CC-DIRECT | Centrosome | 5 | 50 | 3.5E-5 |
| GO-TERM-CC-DIRECT | Nucleus | 9 | 90 | 4.0E-4 |
| GO-TERM-CC-DIRECT | Cytosol | 7 | 70 | 1.8E-3 |
| GO-TERM-CC-DIRECT | condensed nuclear chromosome outer kinetochore | 2 | 20 | 2.0E-3 |
| GO-TERM-CC-DIRECT | replication fork | 2 | 20 | 8.4E-3 |
| GO-TERM-CC-DIRECT | Cytoplasm | 7 | 70 | 2.0E-2 |
| GO-TERM-CC-DIRECT | spindle microtubule | 2 | 20 | 2.2E-2 |
| GO-TERM-CC-DIRECT | chromosome, telomeric region | 2 | 20 | 2.2E-2 |
| GO-TERM-CC-DIRECT | Chromatin | 2 | 20 | 4.3E-2 |
| GO-TERM-CC-DIRECT | PML body | 2 | 20 | 4.7E-2 |
| GO-TERM-MF-DIRECT | protein kinase binding | 6 | 60 | 6.3E-7 |
| GO-TERM-MF-DIRECT | protein kinase activity | 5 | 50 | 2.3E-5 |
| GO-TERM-MF-DIRECT | cyclin-dependent protein serine/threonine kinase activity | 3 | 30 | 1.4E-4 |
| GO-TERM-MF-DIRECT | kinase activity | 4 | 40 | 2.3E-4 |
| GO-TERM-MF-DIRECT | ATP binding | 6 | 60 | 5.0E-4 |
| GO-TERM-MF-DIRECT | protein serine/threonine kinase activity | 4 | 40 | 8.3E-4 |
| GO-TERM-MF-DIRECT | histone kinase activity | 2 | 20 | 2.1E-3 |
| GO-TERM-MF-DIRECT | protein binding | 10 | 100 | 2.8E-3 |
| GO-TERM-MF-DIRECT | ubiquitin protein ligase binding | 3 | 30 | 9.6E-3 |
| KEGG-PATHWAY | Cell cycle | 10 | 100 | 1.5E-16 |
| KEGG-PATHWAY | p53 signaling pathway | 6 | 60 | 9.2E-9 |
| KEGG-PATHWAY | Progesterone-mediated oocyte maturation | 5 | 50 | 2.9E-6 |
| KEGG-PATHWAY | Oocyte meiosis | 5 | 50 | 7.6E-6 |
| KEGG-PATHWAY | Viral carcinogenesis | 5 | 50 | 8.6E-5 |
| KEGG-PATHWAY | FoxO signaling pathway | 3 | 30 | 1.2E-2 |
| KEGG-PATHWAY | Hepatitis B | 3 | 30 | 1.4E-2 |
| KEGG-PATHWAY | HTLV-I infection | 3 | 30 | 4.1E-2 |
Specific Mutations of CDC25C Gene in TCGA-HCC Patients.
| Cancer Type | Sample ID | Protein Change |
|---|---|---|
| HCC | H072059 | V41A |
| HCC | TCGA-DD-AADB-01 | X309-splice |
| HCC | TCGA-DD-AAE2-01 | N222K |
| HCC | TCGA-DD-AACY-01 | L87H |
Mutations in the CDC25C Gene in Other TCGA Cancers Patients.
| Cancer Type | Sample ID | Protein Change |
|---|---|---|
| LUAD | LUAD-D02085-Tumor | X289-splice |
| LUAD | LUAD-RT-S01774-Tumor | D94H |
| LUAD | TCGA-50-7109-01 | P215Q |
| LUAD | TCGA-78-7536-01 | E81D |
| LUAD | TCGA-49-AARN-01 | F419L |
| LUAD | TCGA-55-A493-01 | D100N |
| LUAD | TCGA-73-A9RS-01 | P68Qfs*15 |
| LUAD | TCGA-97-A4LX-01 | Q430P |
| LUAD | TCGA-MN-A4N4-01 | S277C |
| LUAD | TCGA-44-4112-01 | CDC23-CDC25C |
| LUSC | TCGA-66-2789-01 | P421L |
| LUSC | TCGA-94-7943-01 | D135Tfs*29 |
| SCLC | JHU-LX108 | D276Y |
| SCLC | JHU-LX108-R | D276Y |
| COAD | HCT-15 | G343* |
| COAD | Coadread-dfci-2016_593 | E219D |
| COAD | Coadread-dfci-2016_2269 | E219D |
| COAD | Coadread-dfci-2016_546 | Y245Vfs*22 |
| COAD | Coadread-dfci-2016_3535 | Y245Vfs*22 |
| COAD | Coadread-dfci-2016_3646 | X124-splice |
| COAD | Coadread-dfci-2016_102 | G210R |
| COAD | Coadread-dfci-2016_2766 | E382* |
| COAD | Coadread-dfci-2016_3643 | X124-splice |
| COAD | Coadread-dfci-2016_3181 | X124-splice |
| COAD | Coadread-dfci-2016_4505 | R389C |
| COAD | Coadread-dfci-2016-55 | V50A |
| COAD | 587376 | R448Q |
| COAD | TCGA-AA-3678-01 | G339R |
| COAD | TCGA-AA-A010-01 | K303N |
| COAD | 01CO022 | K244Sfs*15 |
| PRAD | 09-006F1_RENAL | D301V |
| PRAD | 6115250 | L158M |
| PRAD | PROS01448-6115250 | L158M |
| ICC | TCGA-WD-A7RX-01 | H436N |
| ICC | TCGA-HQ-A2OF-01 | S263F |
| ICC | TCGA-K4-A4AC-01 | A91P |
| BRCA | TCGA-BH-A18J-01 | H437N |
| BRCA | TCGA-A2-A3Y0-01 | Q202E |
| BRCA | TCGA-A7-A13G-01 | S7L |
| BRCA | TCGA-AC-A5XS-01 | E352Q |
| GBM | Mayo-PDX-Sarkaria-12 | L194S |
| GBM | Mayo-PDX-Sarkaria-181 | D234N |
| CSCC | TCGA-JW-A5VL-01 | E393K |
| CSCC | TCGA-C5-A3HE-01 | L54V |
| STAD | PFG181T | P407Qfs*39 |
| STAD | TCGA-BR-7851-01 | K244Sfs*15 |
| STAD | TCGA-BR-4184-01 | R392C |
| STAD | TCGA-BR-6452-01 | D73N |
| STAD | TCGA-BR-8687-01 | K317T |
| STAD | TCGA-BR-8081-01 | Y245Vfs*22 |
| SCC | TCGA-F7-A624-01 | S17* |
| SCC | TCGA-CV-A6K2-01 | E4K |
| SCC | TCGA-CV-A45Q-01 | P180S |
| SCC | TCGA-CV-A468-01 | L221* |
| DLBCL | TCGA-G8-6326-01 | R461Q |
| DLBCL | TCGA-GR-7351-01 | P218A |
| DLBCL | DLBCL-139 | E203V |
| DLBCL | DLBCL-038 | S78G |
| UEC | TCGA-AX-A0J1-01 | R331H |
| UEC | TCGA-B5-A11E-01 | H436Y |
| UEC | TCGA-B5-A11E-01 | L33P |
| UEC | TCGA-D1-A174-01 | V374M |
| UEC | TCGA-D1-A17Q-01 | E378* |
| UEC | MM18 T | Q430H |
| HCC | H072059 | V41A |
| HCC | TCGA-DD-AADB-01 | X309-splice |
| HCC | TCGA-DD-AAE2-01 | N222K |
| HCC | TCGA-DD-AACY-01 | L87H |
Figure 5.(A) A visual summary of Genetic alterations (data from HCC in TCGA) shows the genetic alteration of 10 key genes which were altered in 184 (49%) of 377 HCC patients. (B) The total alteration frequency of 10 key genes is illustrated. (C) the genetic alteration of CDC25C genes which were altered in 7 (2%) of 377 HCC patients. (D) The particular mutations (V41A, L87 H, N222 K, X309-splice) of CDC25C in HCC patients. (E) Overall survival Kaplan Meier estimate. (F) Progression free survival Kaplan Meier estimate.
Figure 6.The plots of 6 pair-wise correlation genes. (A) CDC25C and CCNB1, (B) CDC25C and CDK1, (C) CDC25C and CHEK1, (D) CDC25C and CCNB2, (E) CDC25C and PLK1, (F) CDC25C and CHEK2.