Literature DB >> 33109024

Dynamical Ising model of spatially coupled ecological oscillators.

Vahini Reddy Nareddy1, Jonathan Machta1,2, Karen C Abbott3, Shadisadat Esmaeili4, Alan Hastings2,4.   

Abstract

Long-range synchrony from short-range interactions is a familiar pattern in biological and physical systems, many of which share a common set of 'universal' properties at the point of synchronization. Common biological systems of coupled oscillators have been shown to be members of the Ising universality class, meaning that the very simple Ising model replicates certain spatial statistics of these systems at stationarity. This observation is useful because it reveals which aspects of spatial pattern arise independently of the details governing local dynamics, resulting in both deeper understanding of and a simpler baseline model for biological synchrony. However, in many situations a system's dynamics are of greater interest than their static spatial properties. Here, we ask whether a dynamical Ising model can replicate universal and non-universal features of ecological systems, using noisy coupled metapopulation models with two-cycle dynamics as a case study. The standard Ising model makes unrealistic dynamical predictions, but the Ising model with memory corrects this by using an additional parameter to reflect the tendency for local dynamics to maintain their phase of oscillation. By fitting the two parameters of the Ising model with memory to simulated ecological dynamics, we assess the correspondence between the Ising and ecological models in several of their features (location of the critical boundary in parameter space between synchronous and asynchronous dynamics, probability of local phase changes and ability to predict future dynamics). We find that the Ising model with memory is reasonably good at representing these properties of ecological metapopulations. The correspondence between these models creates the potential for the simple and well-known Ising class of models to become a valuable tool for understanding complex biological systems.

Keywords:  Ising model with memory; dynamical Ising inference; forecast skill; metapopulation; spatial synchrony

Mesh:

Year:  2020        PMID: 33109024      PMCID: PMC7653388          DOI: 10.1098/rsif.2020.0571

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  35 in total

1.  Phase locking: another cause of synchronicity in predator-prey systems.

Authors: 
Journal:  Trends Ecol Evol       Date:  1999-07       Impact factor: 17.712

2.  Coherence and conservation.

Authors:  D J Earn; S A Levin; P Rohani
Journal:  Science       Date:  2000-11-17       Impact factor: 47.728

3.  Long-Range Order in a Two-Dimensional Dynamical XY Model: How Birds Fly Together.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-12-04       Impact factor: 9.161

4.  Order from disorder: Self-organization in mammalian hair patterning.

Authors:  Yanshu Wang; Tudor Badea; Jeremy Nathans
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-15       Impact factor: 11.205

5.  The geography of spatial synchrony.

Authors:  Jonathan A Walter; Lawrence W Sheppard; Thomas L Anderson; Jude H Kastens; Ottar N Bjørnstad; Andrew M Liebhold; Daniel C Reuman
Journal:  Ecol Lett       Date:  2017-05-26       Impact factor: 9.492

6.  The cellular Ising model: a framework for phase transitions in multicellular environments.

Authors:  Marc Weber; Javier Buceta
Journal:  J R Soc Interface       Date:  2016-06       Impact factor: 4.118

7.  Kinetic Ising models with self-interaction: Sequential and parallel updating.

Authors:  Vahini Reddy Nareddy; Jonathan Machta
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

8.  The importance of Durrett and Levin (1994): "The importance of being discrete (and spatial)".

Authors:  Stephen W Pacala
Journal:  Theor Popul Biol       Date:  2019-10-09       Impact factor: 1.570

9.  Self-organization of synchronous activity propagation in neuronal networks driven by local excitation.

Authors:  Mehdi Bayati; Alireza Valizadeh; Abdolhossein Abbassian; Sen Cheng
Journal:  Front Comput Neurosci       Date:  2015-06-04       Impact factor: 2.380

10.  Spatial patterns of tree yield explained by endogenous forces through a correspondence between the Ising model and ecology.

Authors:  Andrew E Noble; Todd S Rosenstock; Patrick H Brown; Jonathan Machta; Alan Hastings
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-07       Impact factor: 11.205

View more
  3 in total

1.  Influencing dynamics on social networks without knowledge of network microstructure.

Authors:  Matthew Garrod; Nick S Jones
Journal:  J R Soc Interface       Date:  2021-08-25       Impact factor: 4.293

2.  Early warning signals from the periphery: A model suggestion for the study of critical transitions.

Authors:  Manfred Füllsack; Daniel Reisinger; Marie Kapeller; Georg Jäger
Journal:  J Comput Soc Sci       Date:  2021-09-15

3.  Transition prediction in the Ising-model.

Authors:  Manfred Füllsack; Daniel Reisinger
Journal:  PLoS One       Date:  2021-11-04       Impact factor: 3.240

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.