Literature DB >> 33108584

Genomic and transcriptomic analysis unveils population evolution and development of pesticide resistance in fall armyworm Spodoptera frugiperda.

Furong Gui1,2, Tianming Lan3,4, Yue Zhao1, Wei Guo5,6, Yang Dong1,2, Dongming Fang3, Huan Liu3,4, Haimeng Li3, Hongli Wang3, Ruoshi Hao2, Xiaofang Cheng7, Yahong Li8, Pengcheng Yang9, Sunil Kumar Sahu3, Yaping Chen1, Le Cheng10, Shuqi He1, Ping Liu7, Guangyi Fan11, Haorong Lu12,13, Guohai Hu12,13, Wei Dong3, Bin Chen1, Yuan Jiang14, Yongwei Zhang14, Hanhong Xu15, Fei Lin15, Bernard Slippers16, Alisa Postma16, Matthew Jackson16, Birhan Addisie Abate17, Kassahun Tesfaye17,18, Aschalew Lemma Demie17, Meseret Destaw Bayeleygne17, Dawit Tesfaye Degefu19, Feng Chen7, Paul K Kuria20, Zachary M Kinyua20, Tong-Xian Liu21, Huanming Yang13,22, Fangneng Huang23, Xin Liu24,25, Jun Sheng26,27, Le Kang28,29,30.   

Abstract

The fall armyworm (FAW), Spodoptera frugiperda, is a destructive pest native to America and has recently become an invasive insect pest in China. Because of its rapid spread and great risks in China, understanding of FAW genetic background and pesticide resistance is urgent and essential to develop effective management strategies. Here, we assembled a chromosome-level genome of a male FAW (SFynMstLFR) and compared re-sequencing results of the populations from America, Africa, and China. Strain identification of 163 individuals collected from America, Africa and China showed that both C and R strains were found in the American populations, while only C strain was found in the Chinese and African populations. Moreover, population genomics analysis showed that populations from Africa and China have close relationship with significantly genetic differentiation from American populations. Taken together, FAWs invaded into China were most likely originated from Africa. Comparative genomics analysis displayed that the cytochrome p450 gene family is extremely expanded to 425 members in FAW, of which 283 genes are specific to FAW. Treatments of Chinese populations with twenty-three pesticides showed the variant patterns of transcriptome profiles, and several detoxification genes such as AOX, UGT and GST specially responded to the pesticides. These findings will be useful in developing effective strategies for management of FAW in China and other invaded areas.
© 2020. The Author(s).

Entities:  

Keywords:  Spodoptera frugiperda; chromosome-level genome; cytochrome p450; pesticides; population differentiation

Mesh:

Substances:

Year:  2020        PMID: 33108584      PMCID: PMC9226219          DOI: 10.1007/s13238-020-00795-7

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   15.328


  60 in total

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2.  Prediction of migratory routes of the invasive fall armyworm in eastern China using a trajectory analytical approach.

Authors:  Xi-Jie Li; Ming-Fei Wu; Jian Ma; Bo-Ya Gao; Qiu-Lin Wu; Ai-Dong Chen; Jie Liu; Yu-Ying Jiang; Bao-Ping Zhai; Regan Early; Jason W Chapman; Gao Hu
Journal:  Pest Manag Sci       Date:  2019-07-19       Impact factor: 4.845

3.  Fast model-based estimation of ancestry in unrelated individuals.

Authors:  David H Alexander; John Novembre; Kenneth Lange
Journal:  Genome Res       Date:  2009-07-31       Impact factor: 9.043

4.  A heterozygous moth genome provides insights into herbivory and detoxification.

Authors:  Minsheng You; Zhen Yue; Weiyi He; Xinhua Yang; Guang Yang; Miao Xie; Dongliang Zhan; Simon W Baxter; Liette Vasseur; Geoff M Gurr; Carl J Douglas; Jianlin Bai; Ping Wang; Kai Cui; Shiguo Huang; Xianchun Li; Qing Zhou; Zhangyan Wu; Qilin Chen; Chunhui Liu; Bo Wang; Xiaojing Li; Xiufeng Xu; Changxin Lu; Min Hu; John W Davey; Sandy M Smith; Mingshun Chen; Xiaofeng Xia; Weiqi Tang; Fushi Ke; Dandan Zheng; Yulan Hu; Fengqin Song; Yanchun You; Xiaoli Ma; Lu Peng; Yunkai Zheng; Yong Liang; Yaqiong Chen; Liying Yu; Younan Zhang; Yuanyuan Liu; Guoqing Li; Lin Fang; Jingxiang Li; Xin Zhou; Yadan Luo; Caiyun Gou; Junyi Wang; Jian Wang; Huanming Yang; Jun Wang
Journal:  Nat Genet       Date:  2013-01-13       Impact factor: 38.330

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

Review 6.  The UDP-glycosyltransferase (UGT) superfamily expressed in humans, insects and plants: Animal-plant arms-race and co-evolution.

Authors:  Karl Walter Bock
Journal:  Biochem Pharmacol       Date:  2015-10-08       Impact factor: 5.858

7.  Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.

Authors:  Anaïs Gouin; Anthony Bretaudeau; Kiwoong Nam; Sylvie Gimenez; Jean-Marc Aury; Bernard Duvic; Frédérique Hilliou; Nicolas Durand; Nicolas Montagné; Isabelle Darboux; Suyog Kuwar; Thomas Chertemps; David Siaussat; Anne Bretschneider; Yves Moné; Seung-Joon Ahn; Sabine Hänniger; Anne-Sophie Gosselin Grenet; David Neunemann; Florian Maumus; Isabelle Luyten; Karine Labadie; Wei Xu; Fotini Koutroumpa; Jean-Michel Escoubas; Angel Llopis; Martine Maïbèche-Coisne; Fanny Salasc; Archana Tomar; Alisha R Anderson; Sher Afzal Khan; Pascaline Dumas; Marion Orsucci; Julie Guy; Caroline Belser; Adriana Alberti; Benjamin Noel; Arnaud Couloux; Jonathan Mercier; Sabine Nidelet; Emeric Dubois; Nai-Yong Liu; Isabelle Boulogne; Olivier Mirabeau; Gaelle Le Goff; Karl Gordon; John Oakeshott; Fernando L Consoli; Anne-Nathalie Volkoff; Howard W Fescemyer; James H Marden; Dawn S Luthe; Salvador Herrero; David G Heckel; Patrick Wincker; Gael J Kergoat; Joelle Amselem; Hadi Quesneville; Astrid T Groot; Emmanuelle Jacquin-Joly; Nicolas Nègre; Claire Lemaitre; Fabrice Legeai; Emmanuelle d'Alençon; Philippe Fournier
Journal:  Sci Rep       Date:  2017-09-25       Impact factor: 4.379

8.  Genetic comparisons of fall armyworm populations from 11 countries spanning sub-Saharan Africa provide insights into strain composition and migratory behaviors.

Authors:  Rodney N Nagoshi; Georg Goergen; Hannalene Du Plessis; Johnnie van den Berg; Robert Meagher
Journal:  Sci Rep       Date:  2019-06-05       Impact factor: 4.379

9.  Resistance to dual-gene Bt maize in Spodoptera frugiperda: selection, inheritance, and cross-resistance to other transgenic events.

Authors:  Oscar F Santos-Amaya; João V C Rodrigues; Thadeu C Souza; Clébson S Tavares; Silverio O Campos; Raul N C Guedes; Eliseu J G Pereira
Journal:  Sci Rep       Date:  2015-12-17       Impact factor: 4.379

10.  Analysis of strain distribution, migratory potential, and invasion history of fall armyworm populations in northern Sub-Saharan Africa.

Authors:  Rodney N Nagoshi; Georg Goergen; Kodjo Agbeko Tounou; Komi Agboka; Djima Koffi; Robert L Meagher
Journal:  Sci Rep       Date:  2018-02-27       Impact factor: 4.379

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  15 in total

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Authors:  Sandeep Kumar; S B Suby; G K Mahapatro; Naveen Kumar; J C Sekhar; Suresh Nebapure
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2.  Soil-derived bacteria endow Camellia weevil with more ability to resist plant chemical defense.

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3.  Growth inhibition of Spodoptera frugiperda larvae by camptothecin correlates with alteration of the structures and gene expression profiles of the midgut.

Authors:  Benshui Shu; Yan Zou; Haikuo Yu; Wanying Zhang; Xiangli Li; Liang Cao; Jintian Lin
Journal:  BMC Genomics       Date:  2021-05-26       Impact factor: 3.969

4.  Full-length transcriptome analysis of Spodoptera frugiperda larval brain reveals detoxification genes.

Authors:  Lei Yang; Binglin Xing; Fen Li; Li Kui Wang; Linlin Yuan; Amosi Leonard Mbuji; Zhengqiang Peng; Farag Malhat; Shaoying Wu
Journal:  PeerJ       Date:  2021-08-24       Impact factor: 2.984

5.  Insecticide resistance in Australian Spodoptera frugiperda (J.E. Smith) and development of testing procedures for resistance surveillance.

Authors:  Lisa Bird; Melina Miles; Adam Quade; Helen Spafford
Journal:  PLoS One       Date:  2022-02-10       Impact factor: 3.240

6.  Comparison of Gut Bacterial Communities of Fall Armyworm (Spodoptera frugiperda) Reared on Different Host Plants.

Authors:  Dongbiao Lv; Xueying Liu; Yanlu Dong; Zizheng Yan; Xuan Zhang; Ping Wang; Xiangqun Yuan; Yiping Li
Journal:  Int J Mol Sci       Date:  2021-10-19       Impact factor: 5.923

7.  Transcriptome Analysis of Detoxification-Related Genes in Spodoptera frugiperda (Lepidoptera: Noctuidae).

Authors:  Haoliang Chen; Minghui Xie; Lulu Lin; Yongzhi Zhong; Feng Zhang; Weihua Su
Journal:  J Insect Sci       Date:  2022-01-01       Impact factor: 1.857

8.  Geographic Monitoring of Insecticide Resistance Mutations in Native and Invasive Populations of the Fall Armyworm.

Authors:  Sudeeptha Yainna; Nicolas Nègre; Pierre J Silvie; Thierry Brévault; Wee Tek Tay; Karl Gordon; Emmanuelle dAlençon; Thomas Walsh; Kiwoong Nam
Journal:  Insects       Date:  2021-05-18       Impact factor: 2.769

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Journal:  Genome Biol Evol       Date:  2022-01-04       Impact factor: 3.416

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