Literature DB >> 33108028

autodE: Automated Calculation of Reaction Energy Profiles- Application to Organic and Organometallic Reactions.

Tom A Young1, Joseph J Silcock1, Alistair J Sterling1, Fernanda Duarte1.   

Abstract

Calculating reaction energy profiles to aid in mechanistic elucidation has long been the domain of the expert computational chemist. Here, we introduce autodE (https://github.com/duartegroup/autodE), an open-source Python package capable of locating transition states (TSs) and minima and delivering a full reaction energy profile from 1D or 2D chemical representations. autodE is broadly applicable to study organic and organometallic reaction classes, including addition, substitution, elimination, migratory insertion, oxidative addition, and reductive elimination; it accounts for conformational sampling of both minima and TSs and is compatible with many electronic structure packages. The general applicability of autodE is demonstrated in complex multi-step reactions, including cobalt- and rhodium-catalyzed hydroformylation and an Ireland-Claisen rearrangement.
© 2020 Wiley-VCH GmbH.

Entities:  

Keywords:  automation; reaction mechanisms; sampling; transition states

Year:  2020        PMID: 33108028     DOI: 10.1002/anie.202011941

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  5 in total

1.  Machine learning and semi-empirical calculations: a synergistic approach to rapid, accurate, and mechanism-based reaction barrier prediction.

Authors:  Elliot H E Farrar; Matthew N Grayson
Journal:  Chem Sci       Date:  2022-06-14       Impact factor: 9.969

2.  The (not so) simple prediction of enantioselectivity - a pipeline for high-fidelity computations.

Authors:  Rubén Laplaza; Jan-Grimo Sobez; Matthew D Wodrich; Markus Reiher; Clémence Corminboeuf
Journal:  Chem Sci       Date:  2022-05-18       Impact factor: 9.969

3.  Collective Synthesis of Illudalane Sesquiterpenes via Cascade Inverse Electron Demand (4 + 2) Cycloadditions of Thiophene S,S-Dioxides.

Authors:  Kun Ho Kenny Park; Nils Frank; Fernanda Duarte; Edward A Anderson
Journal:  J Am Chem Soc       Date:  2022-05-24       Impact factor: 16.383

Review 4.  Computational Modeling of Supramolecular Metallo-organic Cages-Challenges and Opportunities.

Authors:  Tomasz K Piskorz; Vicente Martí-Centelles; Tom A Young; Paul J Lusby; Fernanda Duarte
Journal:  ACS Catal       Date:  2022-05-02       Impact factor: 13.700

Review 5.  Unlocking the computational design of metal-organic cages.

Authors:  Andrew Tarzia; Kim E Jelfs
Journal:  Chem Commun (Camb)       Date:  2022-03-18       Impact factor: 6.222

  5 in total

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