Literature DB >> 33107821

Bayesian inference for biophysical neuron models enables stimulus optimization for retinal neuroprosthetics.

Jonathan Oesterle1, Christian Behrens1, Cornelius Schröder1, Thoralf Hermann2, Thomas Euler1,3,4, Katrin Franke1,4, Robert G Smith5, Günther Zeck2, Philipp Berens1,3,4,6.   

Abstract

While multicompartment models have long been used to study the biophysics of neurons, it is still challenging to infer the parameters of such models from data including uncertainty estimates. Here, we performed Bayesian inference for the parameters of detailed neuron models of a photoreceptor and an OFF- and an ON-cone bipolar cell from the mouse retina based on two-photon imaging data. We obtained multivariate posterior distributions specifying plausible parameter ranges consistent with the data and allowing to identify parameters poorly constrained by the data. To demonstrate the potential of such mechanistic data-driven neuron models, we created a simulation environment for external electrical stimulation of the retina and optimized stimulus waveforms to target OFF- and ON-cone bipolar cells, a current major problem of retinal neuroprosthetics.
© 2020, Oesterle et al.

Entities:  

Keywords:  bayesian inference; biophysical model; bipolar cell; computational biology; mouse; neuroprosthetics; neuroscience; retina; systems biology; two-photon imaging

Mesh:

Year:  2020        PMID: 33107821      PMCID: PMC7673784          DOI: 10.7554/eLife.54997

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  96 in total

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3.  Inhibitory control of correlated intrinsic variability in cortical networks.

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Review 4.  Retinal implants: a systematic review.

Authors:  Alice T Chuang; Curtis E Margo; Paul B Greenberg
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5.  A mammalian retinal bipolar cell uses both graded changes in membrane voltage and all-or-nothing Na+ spikes to encode light.

Authors:  Shannon Saszik; Steven H DeVries
Journal:  J Neurosci       Date:  2012-01-04       Impact factor: 6.167

6.  Thresholds for activation of rabbit retinal ganglion cells with relatively large, extracellular microelectrodes.

Authors:  Ralph J Jensen; Ofer R Ziv; Joseph F Rizzo
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-04       Impact factor: 4.799

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Journal:  Elife       Date:  2020-09-17       Impact factor: 8.140

8.  Expression of CaV3.2 T-type Ca²⁺ channels in a subpopulation of retinal type-3 cone bipolar cells.

Authors:  J Cui; E Ivanova; L Qi; Z-H Pan
Journal:  Neuroscience       Date:  2012-08-19       Impact factor: 3.590

9.  Integrated allosteric model of voltage gating of HCN channels.

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10.  Modeling the response of ON and OFF retinal bipolar cells during electric stimulation.

Authors:  P Werginz; H Benav; E Zrenner; F Rattay
Journal:  Vision Res       Date:  2014-12-11       Impact factor: 1.886

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  3 in total

1.  Mechanisms underlying activation of retinal bipolar cells through targeted electrical stimulation: a computational study.

Authors:  Javad Paknahad; Pragya Kosta; Jean-Marie C Bouteiller; Mark S Humayun; Gianluca Lazzi
Journal:  J Neural Eng       Date:  2021-12-15       Impact factor: 5.379

2.  Bayesian inference for biophysical neuron models enables stimulus optimization for retinal neuroprosthetics.

Authors:  Jonathan Oesterle; Christian Behrens; Cornelius Schröder; Thoralf Hermann; Thomas Euler; Katrin Franke; Robert G Smith; Günther Zeck; Philipp Berens
Journal:  Elife       Date:  2020-10-27       Impact factor: 8.140

3.  Ancestral circuits for vertebrate color vision emerge at the first retinal synapse.

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  3 in total

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