Literature DB >> 33102739

Complete mitochondrial genome of Carijoa riisei (Duchassaing & Michelotti, 1860) (Octocorallia: Alcyonacea: Stolonifera: Clavulariidae).

Erin E Easton1, David Hicks1.   

Abstract

We report the first complete Stoloniferamitochondrial genome.Carijoa riisei(Duchassaing&Michelotti, 1860) isolate CLP2_A03was collected by scuba at 32 m on the USTS Texas Clipper (27° 53.7827' N, 93° 36.2702' W). The complete mitogenome has the ancestral octocoral gene order for its 14 protein-coding genes, two rRNA genes, and one tRNA gene. It is 18,714 bp (30.7% A, 15.8% C, 18.8% G, and 34.7% T). Of the Alcyonacea mitogenomes published to date, it is most genetically similar (94% uncorrected) to Sinularia ceramensisVerseveldt, 1977 (NC_044122).

Entities:  

Keywords:  Cnidaria; Gulf of Mexico; artificial reef; mesophotic

Year:  2020        PMID： 33102739      PMCID： PMC7577009     

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.610


  6 in total

1.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

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Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

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Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  Comparative mitogenomics, phylogeny and evolutionary history of Leptogorgia (Gorgoniidae).

Authors:  Angelo Poliseno; Christian Feregrino; Stéphane Sartoretto; Didier Aurelle; Gert Wörheide; Catherine S McFadden; Sergio Vargas
Journal:  Mol Phylogenet Evol       Date:  2017-08-04       Impact factor: 4.286

4.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

5.  Octocoral mitochondrial genomes provide insights into the phylogenetic history of gene order rearrangements, order reversals, and cnidarian phylogenetics.

Authors:  Diego F Figueroa; Amy R Baco
Journal:  Genome Biol Evol       Date:  2014-12-24       Impact factor: 3.416

6.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937
  6 in total

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