| Literature DB >> 33101830 |
Haigang Zhang1, Chengji Zhao1, Hui Na1.
Abstract
The biodegradability of phtalic acid esters in marine and freshwater environments was characterized by their binding free energy with corresponding degrading enzymes. According to comprehensive biodegradation effects weights, the binding free energy values were converted into dimensionless efficacy coefficient using ratio normalization method. Then, considering comprehensive dual biodegradation effects value and the structural parameters of PAEs in both marine and freshwater environments, a 3D-QSAR pharmacophore model was constructed, five PAE derivatives (DBP-COOH, DBP-CHO, DBP-OH, DINP-NH2, and DINP-NO2) were screened out based on their environmental friendliness, functionality and stability. The prediction of biodegradation effects on five PAE derivatives by biodegradation models in marine and freshwater environment increased by 15.90 %, 15.84 %, 27.21 %, 12.33 %, and 8.32 %, and 21.57 %, 15.21 %, 20.99 %, 15.10 %, and 9.74 %, respectively. By simulating the photodegradation path of the PAE derivative molecular, it was found that DBP-OH can generate .OH and provides free radicals for the photodegradation of microplastics in the environment.Entities:
Keywords: microplastics; molecular modification; pharmacophore models; photodegradation; ratio normalization method
Mesh:
Substances:
Year: 2020 PMID: 33101830 PMCID: PMC7570447 DOI: 10.1002/open.202000093
Source DB: PubMed Journal: ChemistryOpen ISSN: 2191-1363 Impact factor: 2.630
Comprehensive biodegradation effects and single biodegradation effect pharmacophore models for PAEs in marine and freshwater environments constructed with Hypo Gen.
|
Model tape |
Hypo Gen model 3D spatial relationship |
Hypo No. |
Total cost |
RMS |
R2 |
Features |
|---|---|---|---|---|---|---|
|
Biodegradation comprehensive effects pharmacophore model in marine and freshwater environment |
|
C1 |
50.91 |
0.02 |
0.91 |
HBA[a] HBA RA[b] |
|
C2 |
50.91 |
0.00 |
0.00 |
HBA HBA RA | ||
|
C3 |
50.91 |
0.83 |
0.83 |
HBA HBA RA | ||
|
C4 |
50.91 |
0.00 |
0.00 |
HBA RA | ||
|
C5 |
50.91 |
0.02 |
0.77 |
HBA HBA RA | ||
|
C6 |
50.91 |
0.00 |
0.00 |
HBA HBA H[c] | ||
|
C7 |
50.91 |
0.02 |
0.78 |
HBA HBA | ||
|
C8 |
50.91 |
0.00 |
0.00 |
HBA HBA | ||
|
C9 |
50.91 |
0.02 |
0.83 |
HBA HBA | ||
|
Configuration cost: |
16.15 |
Fixed cost: |
33.64 |
Null cost: |
50.91 | |
|
Biodegradation singel effects pharmacophore model in marine environment |
|
M1 |
50.71 |
0.04 |
0.95 |
HBA HBA RA |
|
M2 |
50.71 |
0.00 |
0.00 |
HBA HBA H | ||
|
M3 |
50.73 |
0.06 |
0.85 |
HBA HBA H | ||
|
M4 |
50.71 |
0.00 |
0.00 |
HBA HBA RA | ||
|
M5 |
50.73 |
0.07 |
0.81 |
HBA HBA RA | ||
|
M6 |
50.71 |
0.00 |
0.00 |
HBA HBA H | ||
|
M7 |
50.73 |
0.07 |
0.78 |
HBA HBA HBA | ||
|
M8 |
50.71 |
0.00 |
0.00 |
HBA HBA RA | ||
|
M9 |
50.73 |
0.07 |
0.81 |
HBA HBA | ||
|
Configuration cost: |
15.95 |
Fixed cost: |
33.64 |
Null cost: |
50.74 | |
|
Biodegradation single effects pharmacophore model in freshwater environment |
|
F1 |
48.80 |
0.04 |
0.86 |
HBA HBA RA |
|
F2 |
48.79 |
0.00 |
0.00 |
HBA HBA RA | ||
|
F3 |
48.80 |
0.04 |
0.84 |
HBA HBA RA | ||
|
F4 |
48.79 |
0.00 |
0.00 |
HBA HBA H | ||
|
F5 |
48.80 |
0.04 |
0.86 |
HBA HBA RA | ||
|
F6 |
48.79 |
0.00 |
0.00 |
HBA HBA | ||
|
F7 |
48.80 |
0.04 |
0.79 |
HBA HBA | ||
|
F8 |
48.79 |
0.00 |
0.00 |
HBA HBA RA | ||
|
F9 |
48.80 |
0.04 |
0.83 |
HBA HBA H | ||
|
Configuration cost: |
14.03 |
Fixed cost: |
33.64 |
Null cost: |
48.80 |
[a] Hydrogen Bond Acceptor. [b] Aromatic Ring [c] Hydrophobic.
Comprehensive biodegradation effect values and predictions of PAEs in the test set with model Hypo 1.
|
PAEs |
|
Fit value |
Estimate |
Activ. |
Error |
|---|---|---|---|---|---|
|
Hypo C1 |
BMPP |
5.84 |
1.80 |
2.89 |
−1.60 |
|
DIDP |
5.73 |
2.32 |
1.23 |
1.89 | |
|
DIPP |
5.52 |
3.81 |
2.01 |
1.90 | |
|
BBP |
5.93 |
1.46 |
1.62 |
−1.10 | |
|
Hypo M1 |
DEP |
5.82 |
2.54 |
1.99 |
1.28 |
|
BBP |
5.78 |
1.85 |
2.108 |
−1.13 | |
|
DIHP |
5.78 |
1.86 |
1.90 |
−1.02 | |
|
DINP |
5.76 |
2.16 |
2.03 |
1.07 | |
|
Hypo F1 |
DEP |
5.85 |
2.61 |
1.88 |
1.38 |
|
DIHP |
5.79 |
2.15 |
2.14 |
1.00 | |
|
DINP |
5.93 |
1.93 |
2.07 |
−1.07 | |
|
BBP |
5.90 |
1.75 |
1.90 |
−1.09 |
Figure 1A 3D congruent map of Hypo C1 and DBP, DEHP, and DINP.
Figure 2Schematic diagrams of the substitution positions affecting the comprehensive biodegradation effect values of DBP, DEHP, and DINP.
Predictive values and degree of change using comprehensive and single biodegradation effects models for PAE derivatives molecules in marine and freshwater environments.
|
Compd. |
|
Cpred |
Fit Value |
Reduction (%) |
Fpred |
Reduction (%) |
Mpred |
Reduction (%) |
Ratio |
|---|---|---|---|---|---|---|---|---|---|
|
Before modification |
DBP |
1.52 |
– |
– |
2.00 |
– |
1.98 |
– |
– |
|
After modification |
DBP−CONH2 |
1.31 |
5.75 |
0.14 |
1.76 |
0.12 |
1.57 |
0.21 |
0.58 |
|
DBP−Br |
1.34 |
5.87 |
0.12 |
1.86 |
0.07 |
1.78 |
0.10 |
0.72 | |
|
DBP−COCH3 |
1.49 |
5.87 |
0.02 |
1.86 |
0.07 |
1.51 |
0.24 |
0.30 | |
|
DBP−Cl |
1.12 |
5.89 |
0.26 |
1.69 |
0.16 |
1.72 |
0.13 |
1.18 | |
|
DBP−F |
1.31 |
5.81 |
0.14 |
1.69 |
0.16 |
1.83 |
0.08 |
2.04 | |
|
DBP−NH2 |
1.60 |
5.82 |
−0.05 |
1.74 |
0.13 |
1.53 |
0.23 |
0.58 | |
|
DBP−OCH3 |
1.46 |
5.92 |
0.04 |
1.59 |
0.21 |
1.65 |
0.17 |
1.23 | |
|
DBP−COOH |
1.48 |
5.83 |
0.02 |
1.57 |
0.22 |
1.67 |
0.16 |
1.36 | |
|
DBP−NO2 |
1.74 |
5.87 |
−0.14 |
1.87 |
0.07 |
1.74 |
0.12 |
0.55 | |
|
DBP−CHO |
1.42 |
5.98 |
0.07 |
1.70 |
0.15 |
1.67 |
0.16 |
0.96 | |
|
DBP−OH |
1.34 |
5.93 |
0.12 |
1.58 |
0.21 |
1.44 |
0.27 |
0.77 | |
|
Before modification |
DEHP |
1.34 |
– |
– |
2.13 |
– |
1.96 |
– |
– |
|
After modification |
DEHP−Br |
1.30 |
5.93 |
0.03 |
2.21 |
−0.04 |
1.97 |
−0.01 |
5.13 |
|
DEHP−COCH3 |
1.42 |
5.97 |
−0.06 |
2.50 |
−0.17 |
2.05 |
−0.05 |
3.47 | |
|
DEHP−Cl |
1.30 |
5.87 |
0.03 |
2.31 |
−0.08 |
1.42 |
0.27 |
−0.30 | |
|
DEHP−F |
1.23 |
5.99 |
0.08 |
1.95 |
0.09 |
2.24 |
−0.14 |
−0.60 | |
|
DEHP−NH2 |
1.11 |
5.79 |
0.18 |
2.16 |
−0.01 |
2.10 |
−0.08 |
0.18 | |
|
DEHP−CONH2 |
1.25 |
5.83 |
0.07 |
1.96 |
0.08 |
1.96 |
0.00 |
−19.25 | |
|
DEHP−OCH3 |
1.36 |
5.91 |
−0.01 |
1.99 |
0.07 |
2.39 |
−0.22 |
−0.30 | |
|
DEHP−NO2 |
1.39 |
5.82 |
−0.04 |
1.81 |
0.15 |
1.91 |
0.02 |
6.72 | |
|
DEHP−OH |
1.57 |
5.95 |
−0.17 |
2.57 |
−0.21 |
2.07 |
−0.06 |
3.45 | |
|
DEHP−CHO |
1.21 |
5.86 |
0.10 |
2.01 |
0.06 |
1.84 |
0.06 |
0.94 | |
|
DEHP−COOH |
1.37 |
5.73 |
−0.02 |
2.13 |
0.00 |
2.00 |
−0.02 |
0.02 | |
|
Before modification |
DINP |
1.33 |
– |
– |
2.07 |
– |
2.03 |
– |
– |
|
After modification |
DINP−CONH2 |
1.50 |
5.84 |
−0.13 |
2.11 |
−0.02 |
1.99 |
0.02 |
−1.28 |
|
DINP−COCH3 |
1.13 |
5.93 |
0.16 |
1.98 |
0.04 |
2.03 |
0.00 |
−16.66 | |
|
DINP−Br |
1.22 |
5.87 |
0.09 |
2.24 |
−0.08 |
2.05 |
−0.01 |
7.34 | |
|
DINP−F |
1.22 |
5.75 |
0.09 |
1.82 |
0.12 |
2.19 |
−0.08 |
−1.49 | |
|
DINP−Cl |
1.27 |
5.87 |
0.05 |
1.88 |
0.09 |
2.06 |
−0.02 |
−5.81 | |
|
DINP−NH2 |
1.23 |
5.87 |
0.08 |
1.76 |
0.15 |
1.78 |
0.12 |
1.23 | |
|
DINP−OCH3 |
1.16 |
5.89 |
0.13 |
1.95 |
0.06 |
2.03 |
0.00 |
−81.91 | |
|
DINP−COOH |
1.33 |
5.81 |
0.00 |
2.10 |
−0.01 |
1.95 |
0.04 |
−0.38 | |
|
DINP−OH |
1.25 |
5.82 |
0.07 |
2.39 |
−0.15 |
1.89 |
0.07 |
−2.23 | |
|
DINP−NO2 |
1.24 |
5.92 |
0.07 |
1.87 |
0.10 |
1.86 |
0.08 |
1.17 | |
|
DINP−CHO |
1.22 |
5.98 |
0.09 |
1.75 |
0.16 |
2.13 |
−0.05 |
−3.04 |
Evaluation of the environmental friendliness and functionality of the PAE derivative molecules.
|
PAEs |
Bio‐toxicity LC50 |
Estrogenic‐toxicity EC50 |
Bioaccumulation logBCF |
Persistence log t1/2 |
Migration p |
Energy gap (e.v.) |
Energy (a.u.) |
Frequency | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
Pred. |
Change rate |
Pred. |
Change rate |
Pred. |
Change rate |
Pred. |
Change rate |
Pred. |
Change rate |
Value |
Change rate |
Value |
Change rate |
Value | |
|
Before modification |
DBP |
0.53 |
– |
0.23 |
– |
2.53 |
– |
3.45 |
– |
0.65 |
– |
5.47 |
– |
−1746.04 |
– |
5.19 |
|
After modification |
DBP−CONH2 |
0.52 |
−1.99 % |
0.51 |
120.50 % |
1.10 |
−56.64 % |
3.60 |
4.39 % |
0.30 |
−54.57 % |
5.4 |
−1.28 % |
−1866.04 |
−6.87 % |
4.87 |
|
DBP−Br |
0.58 |
11.04 % |
0.24 |
1.98 % |
0.96 |
−61.99 % |
3.25 |
−5.73 % |
0.30 |
−53.62 % |
5.05 |
−7.68 % |
−1796.74 |
−2.90 % |
4.59 | |
|
DBP−COCH3 |
0.56 |
5.81 % |
0.60 |
159.27 % |
1.10 |
−56.55 % |
3.63 |
5.31 % |
0.30 |
−54.50 % |
5.49 |
0.37 % |
−1862.57 |
−6.67 % |
5.62 | |
|
DBP−Cl |
0.81 |
53.66 % |
0.36 |
57.16 % |
0.79 |
−68.77 % |
3.62 |
5.04 % |
0.29 |
−55.35 % |
5.12 |
−6.40 % |
−1901.88 |
−8.93 % |
3.11 | |
|
DBP−F |
1.03 |
95.33 % |
0.17 |
−25.10 % |
1.06 |
−58.11 % |
3.44 |
−0.09 % |
0.39 |
−39.54 % |
5.37 |
−1.83 % |
‐1859.39 |
−6.49 % |
6.21 | |
|
DBP−OCH3 |
0.76 |
44.23 % |
0.18 |
−20.43 % |
0.61 |
−76.04 % |
2.37 |
−31.12 % |
0.24 |
−63.33 % |
4.99 |
−8.78 % |
−1826.17 |
−4.59 % |
3.15 | |
|
DBP−COOH |
0.59 |
12.10 % |
0.41 |
78.60 % |
1.14 |
−54.97 % |
3.33 |
−3.38 % |
0.32 |
−51.54 % |
5.42 |
−0.91 % |
−1870.82 |
−7.15 % |
7.16 | |
|
DBP−CHO |
0.67 |
27.70 % |
0.59 |
154.50 % |
1.12 |
−55.57 % |
2.98 |
−13.45 % |
0.30 |
−54.08 % |
5.39 |
−1.46 % |
−1830.09 |
−4.81 % |
7.91 | |
|
DBP−OH |
0.60 |
13.97 % |
0.28 |
21.30 % |
2.11 |
−16.47 % |
3.07 |
−10.92 % |
0.55 |
−16.16 % |
5.59 |
2.19 % |
−1886.87 |
−8.07 % |
5.87 | |
|
Before modification |
DEHP |
0.09 |
– |
0.03 |
– |
1.27 |
– |
2.82 |
– |
0.51 |
– |
5.78 |
– |
−1859.4 |
– |
7.06 |
|
After modification |
DEHP−CHO |
0.53 |
454.58 % |
0.39 |
1288.59 % |
1.19 |
−6.29 % |
2.51 |
−10.90 % |
1.11 |
116.93 % |
5.56 |
−3.81 % |
−1990.07 |
−7.03 % |
5.49 |
|
Before modification |
DINP |
0.04 |
– |
0.00 |
– |
1.39 |
– |
3.33 |
– |
0.54 |
– |
4.86 |
– |
−1674.48 |
– |
1.66 |
|
After modification |
DINP−NH2 |
0.69 |
1516.65 % |
0.34 |
9462.43 % |
0.96 |
−31.05 % |
3.14 |
−5.81 % |
0.48 |
−9.77 % |
4.86 |
0.00 % |
−1862.57 |
−11.23 % |
6.73 |
|
DINP−NO2 |
0.57 |
1233.44 % |
0.18 |
4991.01 % |
0.96 |
−30.64 % |
3.30 |
−1.07 % |
0.42 |
−21.96 % |
4.79 |
−1.44 % |
−1901.88 |
−13.58 % |
4.31 | |
Figure 3Schematic diagram of the UV photodegradation pathway simulation of DBP (a) and DBP‐OH (b).
Figure 4Schematic diagram of the aerobic biodegradation pathway simulation of DBP‐CHO (A: biodegradation pathway by Gram‐negative bacteria, B: biodegradation pathway by Gram‐positive bacteria, I. DBP‐CHO, II. phthalate monoesters, III. phthalic acid, IV. cis‐3,4‐ dihydroxy −3,4‐ dihydrogen p‐phenyl sulfonic acid; V. 3,4‐dihydroxy phthalic acid, VI. cis‐4,5‐dihydroxy‐4,5‐dihydrophthalic acid, VII. 4,5‐ dihydroxy phthalic acid, VIII. protocatechuate).
Biotoxicity and estrogen toxicity predictive results of PAE derivative DBP‐CHO and the products of its biodegradation by Gram‐positive bacteria.
|
Compd. |
Bio‐toxicity LC50 |
Change rate (%) |
Estrogen toxicity EC50 |
Change rate (%) |
|---|---|---|---|---|
|
I |
0.66 |
– |
0.41 |
– |
|
II |
0.60 |
−8.93 |
0.18 |
−55.79 |
|
III |
55.99 |
8411.13 |
38.37 |
9160.95 |
|
VI |
55.37 |
8316.08 |
38.02 |
9076.95 |
|
VII |
6,134.79 |
932433.07 |
37.70 |
8998.42 |
|
VIII |
444.12 |
67410.10 |
391.41 |
94370.39 |
Figure 5Schematic diagram of the biodegradability evaluation of PAE derivative molecules in various environments.
Comprehensive biodegradation effect values of PAE molecules in marine and freshwater environments.
|
PAEs[a] |
Freshwater Environment ΔGbind [kJ/mol] |
p |
Marine Environment ΔGbind [kJ/mol] |
p |
Comprehensive Evaluation Value |
|---|---|---|---|---|---|
|
BMPP |
−41.33 |
1.62 |
−81.20 |
1.91 |
2.89 |
|
DBP |
−101.05 |
2.00 |
−95.94 |
1.98 |
1.52 |
|
DEHP |
−134.94 |
2.13 |
−90.53 |
1.96 |
1.34 |
|
DEP |
−76.56 |
1.88 |
−97.44 |
1.99 |
1.79 |
|
DIDP |
−135.17 |
2.13 |
−107.54 |
2.03 |
1.23 |
|
DINP |
−118.00 |
2.07 |
−105.96 |
2.03 |
1.33 |
|
DIPP |
−95.96 |
1.98 |
−57.06 |
1.76 |
2.01 |
|
DIPrP |
−48.23 |
1.68 |
−75.61 |
1.88 |
2.65 |
|
DMP |
−71.34 |
1.85 |
−92.18 |
1.96 |
1.91 |
|
DNOP |
−114.22 |
2.06 |
−85.67 |
1.93 |
1.50 |
|
DIHP |
−139.13 |
2.14 |
−79.91 |
1.90 |
1.41 |
|
DUP |
−17.87 |
1.25 |
−58.92 |
1.77 |
5.97 |
|
DTDP |
−175.23 |
2.24 |
−76.58 |
1.88 |
1.32 |
|
BBP |
−78.56 |
1.90 |
−125.31 |
2.10 |
1.62 |
|
DAP |
−103.14 |
2.01 |
−100.76 |
2.00 |
1.47 |
|
DIHXP |
−99.80 |
2.00 |
−74.16 |
1.87 |
1.72 |
|
DMEP |
−86.50 |
1.94 |
−99.27 |
2.00 |
1.64 |
|
DPP |
−78.38 |
1.89 |
−75.82 |
1.88 |
1.94 |
|
DPrP |
−80.28 |
1.90 |
−123.79 |
2.09 |
1.60 |
[a] pDF represents the negative logarithm of the PAE binding free energy in the freshwater environment. [b] pDM represents the negative logarithm of the PAE binding free energy in the marine environment.